journal article·2021

Influence of viral transport media and freeze–thaw cycling on the sensitivity of qRT-PCR detection of SARS-CoV-2 nucleic acids

Cian Holohan, Sophia Hanrahan, Nathan Feely, Peng Li, John O'Connell, Catherine Moss, Michael Carr, Oya Tagit, Gil U. Lee

Nanoscale· Volume 13· Issue 37
Publisher page

Abstract

: The choice of VTM is critically important to defining the sensitivity of COVID-19 molecular diagnostics assays and this study suggests they can impact upon the stability of the SARS-CoV-2 viral genome. This becomes increasingly important if the virus structure is destabilised before analysis, which can occur due to poor storage conditions. This study suggests that COVID-19 testing performed with glycerol-containing PBS will produce a high level of stability and sensitivity. These results are in agreement with clinical studies reported for patient-derived samples.
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Research context

OpenAlex topics: SARS-CoV-2 detection and testing · Viral gastroenteritis research and epidemiology · SARS-CoV-2 and COVID-19 Research

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

School of Chemistry and Conway Institute for Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin, Republic of Ireland

Magnostics Ltd, Monkstown, Co. Dublin, Republic of Ireland

National Virus Reference Laboratory, University College Dublin, Belfield, Dublin, Republic of Ireland

International Collaboration Unit, Research Center for Zoonosis Control, Hokkaido University, Sapporo, Japan

Funding

European Commission · Science Foundation Ireland

References (36)

Show source-provided references
1. World Health Organisation (WHO) , 2021 . COVID-19 Weekly Epidemiological Update. Emergency Situational Updates. Available at: https://www.who.int/emergencies/diseases/novel-coronavirus-2019/situation-reports
2. Ji · Biosens. Bioelectron. · 2020 · 166 · 11245510.1016/j.bios.2020.112455 ↗
3. Centers for Disease Control and Prevention , 2020 . CDC 2019-Novel Coronavirus (2019-nCoV) Real-Time RT-PCR Diagnostic Panel. Revision 6. [PDF] Available at: https://www.fda.gov/media/134922/download
4. Pan · Clin. Chem. · 2020 · 66 · 79410.1093/clinchem/hvaa091 ↗
5. Surkova · Lancet Respir. Med. · 2020 · 8 · 116710.1016/S2213-2600(20)30453-7 ↗
6. Klein · Viruses · 2020 · 12 · 86310.3390/v12080863 ↗
7. Melzak · J. Colloid Interface Sci. · 1996 · 181 · 63510.1006/jcis.1996.0421 ↗
8. Vandeventer · J. Phys. Chem. B · 2012 · 116 · 566110.1021/jp3017776 ↗
9. Relova · Vet. Sci. · 2018 · 5 · 1910.3390/vetsci5010019 ↗
10. Zhang · Virol. Sin. · 2020 · 35 · 75810.1007/s12250-020-00273-8 ↗
11. Kwon · Pathogens · 2021 · 10 · 54010.3390/pathogens10050540 ↗
12. Nishibata · Pathol., Res. Pract. · 2021 · 220 · 15338110.1016/j.prp.2021.153381 ↗
13. Wang · J. Am. Med. Assoc. · 2020 · 323 · 1843
14. Gao · Biopreserv. Biobanking · 2020 · 18 · 51110.1089/bio.2020.0099 ↗
15. Martinez · Clin. Microbiol. Newsl. · 2020 · 42 · 12110.1016/j.clinmicnews.2020.07.001 ↗
16. Centers for Disease Control and Prevention , 2020 . Preparation of Viral Transport Medium. Standard Operating Procedure SOP#: DSR-052-02 . https://www.cdc.gov/coronavirus/2019-ncov/downloads/Viral-Transport-Medium.pdf
17. World Health Organisation , Collecting, preserving and shipping specimens for the diagnosis of avian influenza A(H5N1) virus infection Guide for field operations . 2006 , Annex 8, pp. 42–43
18. Rogers · J. Clin. Microbiol. · 2020 · 58 · 708
19. Summer · Sci. Rep. · 2021 · 11 · 1359210.1038/s41598-021-93028-8 ↗
20. Kirkland · Pathology · 2020 · 52 · 81110.1016/j.pathol.2020.09.013 ↗
21. Chin · The Lancet Microbe · 2020 · 1 · e1010.1016/S2666-5247(20)30003-3 ↗
22. Aboubakr · Transbound. Emerg.Dis. · 2020 · 68 · 29610.1111/tbed.13707 ↗
23. Shao · Biopreserv. Biobanking · 2012 · 10 · 410.1089/bio.2011.0016 ↗
24. Yu · Cell Tissue Banking · 2017 · 18 · 43310.1007/s10561-016-9600-7 ↗
25. vanBockel · Viruses · 2020 · 12 · 120810.3390/v12111208 ↗
26. Dzung · J. Mol. Diagn. · 2021 · 220 · 153381
27. Stohr · J. Clin. Virol. · 2020 · 133 · 10468610.1016/j.jcv.2020.104686 ↗
28. Shang · Langmuir · 2006 · 22 · 251610.1021/la052636f ↗
29. O'Mahony · Langmuir · 2013 · 29 · 254610.1021/la3047565 ↗
30. Wölfel · Nature · 2020 · 581 · 46510.1038/s41586-020-2196-x ↗
31. Granados · J. Virol. Methods · 2017 · 247 · 4510.1016/j.jviromet.2017.05.018 ↗
32. Tomand · Clin. Infect. Dis. · 2020 · 71 · 225210.1093/cid/ciaa619 ↗
33. Mokhtar · medRxiv · 202010.1101/2020.11.20.20235390 ↗
34. Johnson · Clin. Microbiol. Rev. · 1990 · 3 · 12010.1128/CMR.3.2.120 ↗
35. J.Brunstein , Freeze-thaw cycles and nucleic acid stability: what's safe for your samples? , 2015
36. Röder · J. Clin. Microbiol. · 2010 · 48 · 426010.1128/JCM.01230-10 ↗