journal article·2022-10-01Open access

Enlarged Field of View in Spatially Modulated Selective Volume Illumination Microscopy

Gianmaria Calisesi, Daniele Ancora, Carlotta Tacconi, Alessandro Fantin, Paola Perin, Roberto Pizzala, Gianluca Valentini, Andrea Farina, Andrea Bassi

Microscopy and Microanalysis· Volume 28· Issue 5

Abstract

Abstract Three-dimensional fluorescence microscopy is a key technology for inspecting biological samples, ranging from single cells to entire organisms. We recently proposed a novel approach called spatially modulated Selective Volume Illumination Microscopy (smSVIM) to suppress illumination artifacts and to reduce the required number of measurements using an LED source. Here, we discuss a new strategy based on smSVIM for imaging large transparent specimens or voluminous chemically cleared tissues. The strategy permits steady mounting of the sample, achieving uniform resolution over a large field of view thanks to the synchronized motion of the illumination lens and the camera rolling shutter. Aided by a tailored deconvolution method for image reconstruction, we demonstrate significant improvement of the resolution at different magnification using samples of varying sizes and spatial features.
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Research context

OpenAlex topics: Advanced Fluorescence Microscopy Techniques · Advanced Optical Sensing Technologies · Optical Coherence Tomography Applications

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Politecnico di Milano Department of Physics, , 20133 Milano, Italy

University of Milano Department of Biosciences, , 20133 Milano, Italy

University of Pavia Department of Brain and Behaviour Science, , 27100 Pavia, Italy

University of Pavia Department of Molecular Medicine, , 27100 Pavia, Italy

Consiglio Nazionale delle ricerche Istituto di Fotonica e Nanotecnologie, , 20133 Milano, Italy

Funding

H2020 Research Infrastructures

References (30)

Show source-provided references
1. Spinning pupil aberration measurement for anisoplanatic deconvolution10.1364/OL.427518 ↗
2. Scanned light sheet microscopy with confocal slit detection10.1364/oe.20.021805 ↗
3. Walsh transforms10.1119/1.12714 ↗
4. Image restoration for a defocused optical system10.1364/ao.22.002772 ↗
5. Fragrance material review on ethyl cinnamate10.1016/j.fct.2007.09.021 ↗
6. Spatially modulated illumination allows for light sheet fluorescence microscopy with an incoherent source and compressive sensing10.1364/boe.10.005776 ↗
7. Compressed sensing in fluorescence microscopy10.1016/j.pbiomolbio.2021.06.004 ↗
8. An introduction to compressive sampling10.1109/MSP.2007.914731 ↗
9. Deconvolution-free subcellular imaging with axially swept light sheet microscopy10.1016/j.bpj.2015.05.013 ↗
10. Light-sheet fluorescence imaging to localize cardiac lineage and protein distribution10.1038/srep42209 ↗
11. Scanning auger spectromicroscopy using the scope foundry software platform10.1002/sia.6401 ↗
12. Rapid 3D light-sheet microscopy with a tunable lens10.1364/OE.21.021010 ↗
13. Multi-purpose SLM-light-sheet microscope10.1364/boe.9.005419 ↗
14. Eyeci: Optical clearing and imaging of immunolabeled mouse eyes using light-sheet fluorescence microscopy10.1016/j.exer.2018.12.001 ↗
15. Optical sectioning deep inside live embryos by selective plane illumination microscopy10.1126/science.1100035 ↗
16. Multi-volumetric refocusing of light fields10.1109/lsp.2020.3043990 ↗
17. Stripe artifact elimination based on nonsubsampled contourlet transform for light sheet fluorescence microscopy10.1117/1.jbo.21.10.106005 ↗
18. Light-sheet microscopy: A tutorial10.1364/AOP.10.000111 ↗
19. iDISCO+ for the study of neuroimmune architecture of the rat auditory brainstem10.3389/fnana.2019.00015 ↗
20. Calcium imaging of neural circuits with extended depth-of-field light-sheet microscopy10.1364/ol.41.000855 ↗
21. Parallelized volumetric fluorescence microscopy with a reconfigurable coded incoherent light-sheet array10.1038/s41377-020-0245-8 ↗
22. Bayesian-based iterative method of image restoration10.1364/JOSA.62.000055 ↗
23. A semi nonnegative matrix factorization technique for pattern generalization in single-pixel imaging10.1109/tci.2018.2811910 ↗
24. Confocal light sheet microscopy: Micron-scale neuroanatomy of the entire mouse brain10.1364/oe.20.020582 ↗
25. Correcting spherical aberrations in confocal light sheet microscopy: A theoretical study10.1002/jemt.22330 ↗
26. Fast structured illumination microscopy using rolling shutter cameras10.1088/0957-0233/27/5/055401 ↗
27. SPED light sheet microscopy: Fast mapping of biological system structure and function10.1016/j.cell.2015.11.061 ↗
28. Tissue clearing and its applications in neuroscience10.1038/s41583-019-0250-1 ↗
29. The mesoSPIM initiative: Open-source light-sheet microscopes for imaging cleared tissue10.1038/s41592-019-0554-0 ↗
30. Faster and less phototoxic 3D fluorescence microscopy using a versatile compressed sensing scheme10.1364/oe.25.013668 ↗