Enlarged Field of View in Spatially Modulated Selective Volume Illumination Microscopy
Source abstract
Abstract
Abstract Three-dimensional fluorescence microscopy is a key technology for inspecting biological samples, ranging from single cells to entire organisms. We recently proposed a novel approach called spatially modulated Selective Volume Illumination Microscopy (smSVIM) to suppress illumination artifacts and to reduce the required number of measurements using an LED source. Here, we discuss a new strategy based on smSVIM for imaging large transparent specimens or voluminous chemically cleared tissues. The strategy permits steady mounting of the sample, achieving uniform resolution over a large field of view thanks to the synchronized motion of the illumination lens and the camera rolling shutter. Aided by a tailored deconvolution method for image reconstruction, we demonstrate significant improvement of the resolution at different magnification using samples of varying sizes and spatial features.
Source: crossref · Quality: baseline
Research context
OpenAlex topics: Advanced Fluorescence Microscopy Techniques · Advanced Optical Sensing Technologies · Optical Coherence Tomography Applications
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
Affiliations
Politecnico di Milano Department of Physics, , 20133 Milano, Italy
University of Milano Department of Biosciences, , 20133 Milano, Italy
University of Pavia Department of Brain and Behaviour Science, , 27100 Pavia, Italy
University of Pavia Department of Molecular Medicine, , 27100 Pavia, Italy
Consiglio Nazionale delle ricerche Istituto di Fotonica e Nanotecnologie, , 20133 Milano, Italy
Funding
H2020 Research Infrastructures
References (30)
Show source-provided references
1. Spinning pupil aberration measurement for anisoplanatic deconvolution10.1364/OL.427518 ↗
2. Scanned light sheet microscopy with confocal slit detection10.1364/oe.20.021805 ↗
3. Walsh transforms10.1119/1.12714 ↗
4. Image restoration for a defocused optical system10.1364/ao.22.002772 ↗
5. Fragrance material review on ethyl cinnamate10.1016/j.fct.2007.09.021 ↗
6. Spatially modulated illumination allows for light sheet fluorescence microscopy with an incoherent source and compressive sensing10.1364/boe.10.005776 ↗
7. Compressed sensing in fluorescence microscopy10.1016/j.pbiomolbio.2021.06.004 ↗
8. An introduction to compressive sampling10.1109/MSP.2007.914731 ↗
9. Deconvolution-free subcellular imaging with axially swept light sheet microscopy10.1016/j.bpj.2015.05.013 ↗
10. Light-sheet fluorescence imaging to localize cardiac lineage and protein distribution10.1038/srep42209 ↗
11. Scanning auger spectromicroscopy using the scope foundry software platform10.1002/sia.6401 ↗
12. Rapid 3D light-sheet microscopy with a tunable lens10.1364/OE.21.021010 ↗
13. Multi-purpose SLM-light-sheet microscope10.1364/boe.9.005419 ↗
14. Eyeci: Optical clearing and imaging of immunolabeled mouse eyes using light-sheet fluorescence microscopy10.1016/j.exer.2018.12.001 ↗
15. Optical sectioning deep inside live embryos by selective plane illumination microscopy10.1126/science.1100035 ↗
16. Multi-volumetric refocusing of light fields10.1109/lsp.2020.3043990 ↗
17. Stripe artifact elimination based on nonsubsampled contourlet transform for light sheet fluorescence microscopy10.1117/1.jbo.21.10.106005 ↗
18. Light-sheet microscopy: A tutorial10.1364/AOP.10.000111 ↗
19. iDISCO+ for the study of neuroimmune architecture of the rat auditory brainstem10.3389/fnana.2019.00015 ↗
20. Calcium imaging of neural circuits with extended depth-of-field light-sheet microscopy10.1364/ol.41.000855 ↗
21. Parallelized volumetric fluorescence microscopy with a reconfigurable coded incoherent light-sheet array10.1038/s41377-020-0245-8 ↗
22. Bayesian-based iterative method of image restoration10.1364/JOSA.62.000055 ↗
23. A semi nonnegative matrix factorization technique for pattern generalization in single-pixel imaging10.1109/tci.2018.2811910 ↗
24. Confocal light sheet microscopy: Micron-scale neuroanatomy of the entire mouse brain10.1364/oe.20.020582 ↗
25. Correcting spherical aberrations in confocal light sheet microscopy: A theoretical study10.1002/jemt.22330 ↗
26. Fast structured illumination microscopy using rolling shutter cameras10.1088/0957-0233/27/5/055401 ↗
27. SPED light sheet microscopy: Fast mapping of biological system structure and function10.1016/j.cell.2015.11.061 ↗
28. Tissue clearing and its applications in neuroscience10.1038/s41583-019-0250-1 ↗
29. The mesoSPIM initiative: Open-source light-sheet microscopes for imaging cleared tissue10.1038/s41592-019-0554-0 ↗
30. Faster and less phototoxic 3D fluorescence microscopy using a versatile compressed sensing scheme10.1364/oe.25.013668 ↗