journal article·2022-04-01Open access

RETRACTED: Automated Tools to Advance High-Resolution Imaging in Liquid

G M Jonaid, Michael A Casasanta, William J Dearnaley, Samantha Berry, Liam Kaylor, Madeline J Dressel-Dukes, Michael S Spilman, Jennifer L Gray, Deborah F Kelly

Microscopy and Microanalysis· Volume 28· Issue 2
This record is marked as retracted by the source. Review the publisher’s notice before using its findings.

Abstract

Liquid-electron microscopy (EM), the room-temperature correlate to cryo-EM, is a rapidly growing field providing high-resolution insights of macromolecules in solution. Here, we describe how liquid-EM experiments can incorporate automated tools to propel the field to new heights. We demonstrate fresh workflows for specimen preparation, data collection, and computing processes to assess biological structures in liquid. Adeno-associated virus (AAV) and the SARS-CoV-2 nucleocapsid (N) were used as model systems to highlight the technical advances. These complexes were selected based on their major differences in size and natural symmetry. AAV is a highly symmetric, icosahedral assembly with a particle diameter of ~25 nm. At the other end of the spectrum, N protein is an asymmetric monomer or dimer with dimensions of approximately 5–7 nm, depending upon its oligomerization state. Equally important, both AAV and N protein are popular subjects in biomedical research due to their high value in vaccine development and therapeutic efforts against COVID-19. Overall, we demonstrate how automated practices in liquid-EM can be used to decode molecules of interest for human health and disease.
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Research context

OpenAlex topics: Advanced Electron Microscopy Techniques and Applications · Force Microscopy Techniques and Applications · Lipid Membrane Structure and Behavior

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Huck Institutes of the Life Sciences, Pennsylvania State University Bioinformatics and Genomics Graduate Program, , University Park, PA 16802,

Pennsylvania State University Department of Biomedical Engineering, , University Park, PA 16802,

Materials Research Institute, Pennsylvania State University , University Park, PA 16802,

Pennsylvania State University Center for Structural Oncology, , University Park, PA 16802,

Huck Institutes of the Life Sciences, Pennsylvania State University Molecular, Cellular, and Integrative Biosciences Graduate Program, , University Park, PA 16802,

Protochips Inc. , Morrisville, NC 27560,

Direct Electron, LP , San Diego, CA 92128,

Funding

National Cancer Institute

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