journal article·2025-04Open access

DNA-encoded dynamic hydrogels for 3D bioprinted cartilage organoids

Ziyu Chen, Hao Zhang, Jingtao Huang, Weizong Weng, Zhen Geng, Mengmeng Li, Jiacan Su

Abstract

Articular cartilage, composed of chondrocytes within a dynamic viscoelastic matrix, has limited self-repair capacity, posing a significant challenge for regeneration. Constructing high-fidelity cartilage organoids through three-dimensional (3D) bioprinting to replicate the structure and physiological functions of cartilage is crucial for regenerative medicine, drug screening, and disease modeling. However, commonly used matrix bioinks lack reversible cross-linking and precise controllability, hindering dynamic cellular regulation. Thus, encoding bioinks adaptive for cultivating cartilage organoids is an attractive idea. DNA, with its ability to be intricately encoded and reversibly cross-linked into hydrogels, offers precise manipulation at both molecular and spatial structural levels. This endows the hydrogels with viscoelasticity, printability, cell recognition, and stimuli responsiveness. This paper elaborates on strategies to encode bioink via DNA, emphasizing the regulation of predictable dynamic properties and the resulting interactions with cell behavior. The significance of these interactions for the construction of cartilage organoids is highlighted. Finally, we discuss the challenges and future prospects of using DNA-encoded hydrogels for 3D bioprinted cartilage organoids, underscoring their potential impact on advancing biomedical applications.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Osteoarthritis Treatment and Mechanisms · Chemical Synthesis and Analysis · 3D Printing in Biomedical Research

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (100+)

Show source-provided references
1. Cartilaginous organoids: advances, applications, and perspectives10.1002/anbr.202200114 ↗
2. Articulation inspired by nature: a review of biomimetic and biologically active 3D printed scaffolds for cartilage tissue engineering10.1039/D1BM01540K ↗
3. Cartilage regeneration10.5435/JAAOS-21-05-303 ↗
5. Medical expenditures and earnings losses among US adults with arthritis in 201310.1002/acr.23425 ↗
6. Silk fibroin-based biomaterials for cartilage/osteochondral repair10.7150/thno.74548 ↗
7. In situ expansion, differentiation, and electromechanical coupling of human cardiac muscle in a 3D bioprinted, chambered organoid10.1161/CIRCRESAHA.119.316155 ↗
8. The effect of a bioactive collagen membrane releasing PDGF or GDF-5 on bone regeneration10.1016/j.biomaterials.2013.12.006 ↗
9. Mussel-inspired agarose hydrogel scaffolds for skin tissue engineering
10. A facile fabrication of novel stuff with antibacterial property and osteogenic promotion utilizing red phosphorus and near-infrared light
11. Organoid extracellular vesicle-based therapeutic strategies for bone therapy
12. A brief history of organoids10.1152/ajpcell.00120.2020 ↗
13. Dynamic matrices with DNA-encoded viscoelasticity for cell and organoid culture10.1038/s41565-023-01483-3 ↗
14. Three-dimensional bio-printing of decellularized extracellular matrix-based bio-inks for cartilage regeneration: a systematic review
15. One-pot synthesis of hydroxyapatite hybrid bioinks for digital light processing 3D printing in bone regeneration10.1016/j.jmst.2024.01.001 ↗
16. DNA-based hydrogels: ideal biomaterials for cartilage organoids10.1016/j.fmre.2024.04.001 ↗
17. Spheroidal organoids reproduce characteristics of longitudinal depth zones in bovine articular cartilage10.1159/000447532 ↗
18. Spatial patterning of phenotypically distinct microtissues to engineer osteochondral grafts for biological joint resurfacing10.1016/j.biomaterials.2022.121750 ↗
19. Bioprinting of stem cell spheroids followed by post-printing chondrogenic differentiation for cartilage tissue engineering
20. Tissue engineering: strategies, stem cells and scaffolds10.1111/j.1469-7580.2008.00878.x ↗
21. Cartilage tissue engineering: from biomaterials and stem cells to osteoarthritis treatments10.1016/j.rehab.2016.03.002 ↗
22. Hydrogels for bone organoid construction: from a materiobiological perspective10.1016/j.jmst.2022.07.008 ↗
23. Daly · Bioprinting for the Biologist, Cell · 2021 · 184 · 18
24. Hydrogel microsphere stem cell encapsulation enhances cardiomyocyte differentiation and functionality in scalable suspension system
25. Hyaluronic acid-based dynamic hydrogels for cartilage repair and regeneration10.3390/gels10110703 ↗
26. Silk fibroin-based hydrogels for cartilage organoids in osteoarthritis treatment10.7150/thno.103491 ↗
27. Research progress in hydrogels for cartilage organoids
28. Polymeric DNA hydrogel: design, synthesis and applications10.1016/j.progpolymsci.2019.101163 ↗
29. Harnessing nucleic acids nanotechnology for bone/cartilage regeneration
30. Controlling the catalytic functions of DNAzymes within constitutional dynamic networks of DNA nanostructures10.1021/jacs.7b04531 ↗
31. 432A perspective on light-based bioprinting of DNA hydrogels for advanced bone regeneration: implication for bone organoids10.18063/ijb.688 ↗
32. DNA assembly-based stimuli-responsive systems10.1002/advs.202100328 ↗
33. Super-soft and super-elastic DNA robot with magnetically driven navigational locomotion for cell delivery in confined space10.1002/anie.201913549 ↗
34. Microenvironment-responsive nanocarriers for targeted bone disease therapy10.1016/j.nantod.2023.101838 ↗
35. Hydrogels and bioprinting in bone tissue engineering: creating artificial stem‐cell niches for in vitro models10.1002/adma.202301670 ↗
36. A biostable l-DNA hydrogel with improved stability for biomedical applications
37. Anti-friction MSCs delivery system improves the therapy for severe osteoarthritis10.1002/adma.202104758 ↗
38. A difunctional regeneration scaffold for knee repair based on aptamer‐directed cell recruitment10.1002/adma.201605235 ↗
39. Dual-network DNA–silk fibroin hydrogels with controllable surface rigidity for regulating chondrogenic differentiation10.1039/D3MH01581E ↗
40. Boosting cartilage repair with silk fibroin-DNA hydrogel-based cartilage organoid precursor
41. The regulation of cartilage extracellular matrix homeostasis in joint cartilage degeneration and regeneration10.1016/j.biomaterials.2020.120555 ↗
42. The micromechanics of the superficial zone of articular cartilage10.1016/j.joca.2015.05.030 ↗
43. The biomechanics of cartilage—an overview10.3390/life11040302 ↗
44. The basic science of articular cartilage: structure, composition, and function10.1177/1941738109350438 ↗
45. Zone-dependent mechanical properties of human articular cartilage obtained by indentation measurements10.1007/s10856-018-6066-0 ↗
46. Research progress in hydrogels for cartilage organoids
47. Dynamic mechanical loading and growth factors influence chondrogenesis of induced pluripotent mesenchymal progenitor cells in a cartilage-mimetic hydrogel10.1039/C9BM01081E ↗
48. De novo neo-hyaline-cartilage from bovine organoids in viscoelastic hydrogels10.1016/j.actbio.2021.04.008 ↗
49. Patterned, organoid-based cartilaginous implants exhibit zone specific functionality forming osteochondral-like tissues in vivo10.1016/j.biomaterials.2021.120820 ↗
50. Spatial patterning of phenotypically distinct microtissues to engineer osteochondral grafts for biological joint resurfacing10.1016/j.biomaterials.2022.121750 ↗
51. Development of articular cartilage grafts using organoid formation techniques10.1016/j.transproceed.2008.01.024 ↗
52. Additive manufacturing of cartilage-mimetic scaffolds as off-the-shelf implants for joint regeneration10.1088/1758-5090/ac41a0 ↗
53. 3D printing of mechanically functional meniscal tissue equivalents using high concentration extracellular matrix inks
54. Scaffold-free three-dimensional cartilage regeneration based on cartilaginous organoids bioassembly technology10.1002/agt2.619 ↗
55. Neo-cartilage formation using human nondegenerate versus osteoarthritic chondrocyte-derived cartilage organoids in a viscoelastic hydrogel10.1002/jor.25540 ↗
56. Formation of osteochondral organoids from murine induced pluripotent stem cells10.1089/ten.tea.2020.0273 ↗
57. De novo neo-hyaline-cartilage from bovine organoids in viscoelastic hydrogels10.1016/j.actbio.2021.04.008 ↗
58. Designing hydrogels for 3D cell culture using dynamic covalent crosslinking10.1002/adhm.202100234 ↗
59. Adaptable hydrogel with reversible linkages for regenerative medicine: dynamic mechanical microenvironment for cells, Bioact
60. Soft, dynamic hydrogel confinement improves kidney organoid lumen morphology and reduces epithelial–mesenchymal transition in culture10.1002/advs.202200543 ↗
61. Biomaterial-driven kidney organoid maturation
62. Rational design of DNA hydrogels based on molecular dynamics of polymers
63. Designer DNA hydrogels stimulate 3D cell invasion by enhanced receptor expression and membrane endocytosis10.1021/acsbiomaterials.1c01085 ↗
64. Spatially-encoding hydrogels with DNA to control cell signaling10.1002/adma.202301086 ↗
65. Functional DNA based hydrogels: development, properties and biological applications10.1021/acsbiomaterials.0c01125 ↗
66. Enzyme-catalysed assembly of DNA hydrogel10.1038/nmat1741 ↗
67. i-Motif DNA: structural features and significance to cell biology10.1093/nar/gky735 ↗
68. Structure of a triple helical DNA with a triplex-duplex junction10.1021/bi991811m ↗
69. Triplex DNA nanostructures: from basic properties to applications10.1002/anie.201701868 ↗
70. Human telomeric DNA: G-quadruplex, i-motif and Watson-Crick double helix10.1093/nar/gkf597 ↗
71. G-quadruplexes in promoters throughout the human genome10.1093/nar/gkl1057 ↗
72. The i-motif in nucleic acids10.1016/S0959-440X(00)00091-9 ↗
73. A pH-cascaded DNA hydrogel mediated by reconfigurable A-motif duplex, i-motif quadruplex, and T·A-T triplex structures10.1002/adfm.202304966 ↗
74. Reversible conformational changes in the parallel type G-quadruplex structure inside a thermoresponsive hydrogel10.1039/C7CC00279C ↗
75. Potassium−Lead-Switched G-quadruplexes: a new class of DNA logic gates10.1021/ja9051075 ↗
76. A pH‐triggered, fast‐responding DNA hydrogel10.1002/anie.200902538 ↗
77. pH-responsive and switchable triplex-based DNA hydrogels10.1039/C5SC00594A ↗
78. Fabrication of physical and chemical crosslinked hydrogels for bone tissue engineering
79. DNA materials: bridging nanotechnology and biotechnology10.1021/ar5001082 ↗
80. Engineering DNA-based functional materials10.1039/c1cs15162b ↗
81. Tailoring DNA self-assembly to build hydrogels
82. Self-assembled DNA hydrogels with designable thermal and enzymatic responsiveness10.1002/adma.201003343 ↗
83. Dynamically programmed switchable DNA hydrogels based on a DNA circuit mechanism10.1002/smll.201900490 ↗
84. Pristine DNA hydrogels from biotechnologically derived plasmid DNA10.1002/anie.201705001 ↗
85. Enzyme-based fabrication of physical DNA hydrogels: new materials and applications10.1038/s41428-020-0340-y ↗
86. Thermostable branched DNA nanostructures as modular primers for polymerase chain reaction10.1002/ange.201302175 ↗
87. Controlled assembly of dendrimer-like DNA10.1038/nmat1045 ↗
88. Multifunctional nanoarchitectures from DNA-based ABC monomers10.1038/nnano.2009.93 ↗
89. In situ terminus-regulated DNA hydrogelation for ultrasensitive on-chip microRNA assay10.1016/j.bios.2019.04.053 ↗
90. Construction of pH-triggered DNA hydrogels based on hybridization chain reactions10.1007/s40242-019-0034-1 ↗
91. Rolling circle amplification (RCA)-based DNA hydrogel10.1038/s41596-021-00621-2 ↗
92. Double rolling circle amplification generates physically cross-linked DNA network for stem cell fishing10.1021/jacs.9b11001 ↗
93. Small molecule‐templated DNA hydrogel with record stiffness integrates and releases DNA nanostructures and gene silencing nucleic acids10.1002/advs.202205713 ↗
94. In situ bone regeneration enabled by a biodegradable hybrid double-network hydrogel10.1039/C9BM00561G ↗
95. Physically cross-linked DNA hydrogel-based sustained cytokine delivery for in situ diabetic alveolar bone rebuilding10.1021/acsami.2c04769 ↗
96. Reinforcing DNA supramolecular hydrogel with polymeric multiple-unit linker10.31635/ccschem.022.202101523 ↗
97. Historical perspectives and recent research on DNA hydrogel-based stimuli-responsive systems and bioengineering applications10.1021/acsapm.2c01528 ↗
98. Highly stiff and stretchable DNA liquid crystalline organogels with super plasticity, ultrafast self‐healing, and magnetic response behaviors10.1002/adma.202106208 ↗
99. Programmable all-DNA hydrogels based on rolling circle and multiprimed chain amplification products10.1063/5.0169063 ↗
100. Programmable protein–DNA hybrid hydrogels for the immobilization and release of functional proteins10.1039/C4CC07144A ↗