journal article·2010-06-15

DNA Density-Dependent Assembly Behavior of Colloidal Micelles

Bryan A. Baker, Valeria T. Milam

Langmuir· Volume 26· Issue 12
Publisher page

Abstract

A key advantage of DNA-mediated colloidal assembly is the ability to tune the strength of adhesion between particles based on sequence characteristics. In the current study, we have investigated DNA-mediated assembly of polystyrene colloidal particles as a function of sequence length, sequence fidelity, and probe density for DNA sequences patterned from the Salmonella genome. The results of our work indicate that the density of DNA probe strands heavily influences the ability of immobilized sequences to hybridize between surfaces of bidisperse colloidal particles. Incubating suspensions at higher temperatures (to minimize secondary structures that might otherwise compromise duplex formation) was also found to have less effect than duplex density on DNA-mediated particle assembly. We believe these results may add to the understanding and design considerations of directed particle assembly using DNA hybridization, especially in the submicrometer and micrometer size regime.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Advanced biosensing and bioanalysis techniques · Biosensors and Analytical Detection · DNA and Nucleic Acid Chemistry

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

School of Materials Science & Engineering

Wallace H. Coulter Department of Biomedical Engineering

Petit Institute for Bioengineering and Bioscience

References (35)

Show source-provided references
1. Mirkin C. A. · Nature · 1996 · 382 · 60710.1038/382607a0 ↗
2. Alivisatos A. P. · Nature · 1996 · 382 · 60910.1038/382609a0 ↗
3. Jakobsen U. · J. Am. Chem. Soc. · 2008 · 130 · 1046210.1021/ja8030054 ↗
4. Alemdaroglu F. E. · Org. Biomol. Chem. · 2007 · 5 · 131110.1039/B617941J ↗
5. Bajaj M. G. · Mater. Res. Soc. Symp. Proc. · 2004 · 1 · H1.2.1
6. Milam V. T. · Langmuir · 2003 · 19 · 1031710.1021/la034376c ↗
7. Biancaniello P. L. · Phys. Rev. Lett. · 2005 · 94 · 05830210.1103/PhysRevLett.94.058302 ↗
8. Kim A. J. · Langmuir · 2006 · 22 · 199110.1021/la0528955 ↗
9. Valignat M.-P. · Proc. Natl. Acad. Sci. U.S.A. · 2005 · 102 · 422510.1073/pnas.0500507102 ↗
10. Stevens P. W. · Nucleic Acids Res. · 1999 · 27 · 171910.1093/nar/27.7.1719 ↗
11. Henry M. R. · Anal. Biochem. · 1999 · 276 · 20410.1006/abio.1999.4344 ↗
12. Fulton R. J. · Clin. Chem. · 1997 · 43 · 174910.1093/clinchem/43.9.1749 ↗
13. Wolf S. F. · Nucleic Acids Res. · 1987 · 15 · 291110.1093/nar/15.7.2911 ↗
14. Huo F. · Adv. Mater. · 2006 · 18 · 230410.1002/adma.200601178 ↗
15. Loweth C. J. · Angew. Chem., Int. Ed. · 1999 · 38 · 180810.1002/(SICI)1521-3773(19990614)38:12<1808::AID-ANIE1808>3.0.CO;2-C ↗
16. Hurst S. J. · J. Am. Chem. Soc. · 2008 · 130 · 1219210.1021/ja804266j ↗
17. Jin R. · J. Am. Chem. Soc. · 2003 · 125 · 164310.1021/ja021096v ↗
18. Park c. Y. · Nature · 2008 · 451 · 55310.1038/nature06508 ↗
19. Storhoff J. J. · J. Am. Chem. Soc. · 2000 · 122 · 464010.1021/ja993825l ↗
20. Nykypanchuk D. · Nature · 2008 · 451 · 54910.1038/nature06560 ↗
21. Harris N. C. · J. Phys. Chem. B · 2006 · 110 · 1639310.1021/jp062287d ↗
22. Tison C. K. · Langmuir · 2007 · 23 · 972810.1021/la700601j ↗
23. Tison C. K. · Biomacromolecules · 2008 · 9 · 246810.1021/bm800497g ↗
24. Maye M. M. · Small · 2007 · 3 · 167810.1002/smll.200700357 ↗
25. Peterson A. W. · Nucleic Acids Res. · 2001 · 29 · 516310.1093/nar/29.24.5163 ↗
26. Hiddessen A. L. · Langmuir · 2004 · 20 · 678810.1021/la036416i ↗
27. Hiddessen A. L. · Langmuir · 2000 · 16 · 974410.1021/la000715f ↗
28. Liu J. · J. Am. Chem. Soc. · 2005 · 127 · 1267710.1021/ja053567u ↗
29. Dunbar S. A. · J. Microbiol. Methods · 2003 · 53 · 24510.1016/S0167-7012(03)00028-9 ↗
30. Markham, N. R. and Zuker, M.MFold.http://dinamelt.bioinfo.rpi.edu/. Accessed 09/16/2008.
31. Markham N. R. · Nucleic Acids Res. · 2005 · 33 · W57710.1093/nar/gki591 ↗
32. Markham, N. R. and Zuker, M.InBioinformatics, Volume II. Structure, Functions and Applications;Keith, J. M., Ed.Humana Press:Totowa, NJ, 2008; Vol.2, pp3−31.
33. Hermanson, G. T.Bioconjugate Techniques;Academic Press:San Diego, 1996; p785.
34. Biancaniello P. L. · Langmuir · 2007 · 23 · 268810.1021/la062885j ↗
35. Smith S. B. · Science · 1996 · 271 · 79510.1126/science.271.5250.795 ↗