journal article·2021-08-24

EasyNanopore: A Ready-to-Use Processing Software for Translocation Events in Nanopore Translocation Experiments

Jing Tu, Hao Meng, LinLin Wu, Guohao Xi, Jiye Fu, Zuhong Lu

Langmuir· Volume 37· Issue 33
Publisher page

Abstract

We developed EasyNanopore which is a ready-to-use software to select the events of a nanopore molecular translocation experiment. The software is released as an executable file with a graphical user interface and provides several versions suitable for different operating systems without installing any running environment to execute it. We use the adaptive threshold which adapts to the low-frequency variation of the baseline to detect events and uses a multiprocess method to accelerate the process of event detection. After the event is identified, its duration and amplitude information will be extracted and a resulting txt file will be generated for further analysis. Our software runs fast and can effectively extract the data from data of large-scale nanopore molecular translocation experiments.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Nanopore and Nanochannel Transport Studies · Geophysical and Geoelectrical Methods · Ion-surface interactions and analysis

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China

Funding

Ministry of Science and Technology of the People's Republic of China · Government of Jiangsu Province

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