DNA-directed enzyme immobilization on Fe3O4 modified with nitrogen-doped graphene quantum dots as a highly efficient and stable multi-catalyst system
Source abstract
Abstract
The exploration of new tactics for manufacturing artificial immobilized multi-enzyme systems based on enzyme cascades has recently attracted considerable interest because of the urgent need for multi-enzyme catalysts and the high cost of free enzymes. Because of the inevitable limitations of native enzymes such as instability and storage issues, the development of nanozyme–enzyme cascades is needed. A versatile strategy was developed for fabricating an efficient multi-catalyst system by immobilizing glucose oxidase (GOx) on ferriferous oxide nanocomposites functionalized with nitrogen-doped graphene quantum dots (Fe3O4@N-GQDs) through DNA-directed immobilization. The Fe3O4@N-GQDs acted as a carrier for the natural enzyme and showed high peroxidase activity which enabled an enzyme cascade that included GOx to be set up. This multi-catalyst system showed great catalytic activity, reversibility and operational stability. The surfaces of GOx-targeted magnetic nanoparticles were regenerated by mild dehybridization of DNA. The Michaelis constant (Km) and maximum initial velocity (Vmax) of the multi-catalyst system were 1.069 mM and 11.2 × 10−8 M s−1, respectively, which are considerably better than the corresponding values for adsorbed and free bienzyme combinations. The increased bioactivity of the multi-catalyst system is ascribed to the satisfactory peroxidase-like activity of Fe3O4@N-GQDs, the enzyme–promoting effect of the QDs and enhancement by DNA-directed immobilization. Because of the diverse range of possible nanozyme–enzyme combinations and high efficiency of this approach, this work provides a novel pathway for the manufacturing of synthetic enzyme catalyst systems, which have great potential in the field of biotechnology.
Source: openaire · Quality: candidate unverified · Source record ↗
Research context
OpenAlex topics: Advanced Nanomaterials in Catalysis · Electrochemical sensors and biosensors · Nanocluster Synthesis and Applications
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References (51)
Show source-provided references
1. Bist I, Bhakta S, Jiang D, Keyes TE, Martin A, Forster RJ, Rusling JF (2017) Evaluating metabolite-related DNA oxidation and adduct damage from aryl amines using a microfluidic ECL array. Anal Chem 89:12441–1244910.1021/acs.analchem.7b03528 ↗
2. Kim M, Shim J, Li T, Woo M, Cho D, Lee J, Park HG (2012) Colorimetric quantification of galactose using a nanostructured multi-catalyst system entrapping galactose oxidase and magnetic nanoparticles as peroxidase mimetics. Analyst 137:1137–114310.1039/c2an15889b ↗
3. Chen Y, Xianyu Y, Wu J, Dong M, Zheng W, Sun J, Jiang X (2017) Double-enzymes-mediated bioluminescent sensor for quantitative and ultrasensitive point-of-care testing. Anal Chem 89:5422–542710.1021/acs.analchem.7b00239 ↗
4. Zhong C, You C, Wei P, Zhang Y (2017) Thermal cycling cascade biocatalysis of Myo-inositol synthesis from sucrose. ACS Catal 7:5992–599910.1021/acscatal.7b01929 ↗
5. Peschke T, Skoupi M, Burgahn T, Gallus S, Ahmed I, Rabe K, Niemeyer C (2017) Self immobilizing fusion enzymes for compartmentalized biocatalysis. ACS Catal 7:7866–787210.1021/acscatal.7b02230 ↗
6. Huber D, Tegl G, Mensah A, Beer B, Baumann M, Borth N, Sygmund C, Ludwig R, Guebitz GM (2017) A dual-enzyme hydrogen peroxide generation machinery in hydrogels supports antimicrobial wound treatment. ACS Appl Mater Interfaces 9:15307–1531610.1021/acsami.7b03296 ↗
7. Pitzalis F, Monduzzi M, Salis A (2017) A bienzymatic biocatalyst constituted by glucose oxidase and horseradish peroxidase immobilized on ordered mesoporous silica. Microporous Mesoporous Mater 241:145–15410.1016/j.micromeso.2016.12.023 ↗
8. Sun J, Du K, Song X, Gao Q, Wu H, Ma J, Ji P, Feng W (2015) Specific immobilization of D amino acid oxidase on hematin-functionalized support mimicking multi-enzyme catalysis. Green Chem 17:4465–447210.1039/C5GC01233C ↗
9. Li J, Ma J, Jiang Y, Jiang T, Wang Y, Chen Y, Liu S (2016) Immobilizing enzymes in regular-sized gelatin microspheres through a membrane emulsification method. J Mater Sci 51:6357–6369. https://doi.org/10.1007/s10853-016-9932-510.1007/s10853-016-9932-5 ↗
10. Wei H, Wang E (2013) Nanomaterials with enzyme-like characteristics (nanozymes): next-generation artificial enzymes. Chem Soc Rev 42:6060–609310.1039/c3cs35486e ↗
11. Li G, Ma P, Zhang Y, Liu X, Zhang H, Xue W, Mi Y, Luo Y, Fan H (2016) Synthesis of Cu2O nanowire mesocrystals using PTCDA as a modifier and their superior peroxidase-like activity. J Mater Sci 51:3979–3988. https://doi.org/10.1007/s10853-015-9716-310.1007/s10853-015-9716-3 ↗
12. Song Y, Qu K, Zhao C, Ren J, Qu X (2010) Graphene oxide: intrinsic peroxidase catalytic activity and its application to glucose detection. Adv Mater 22:2206–221010.1002/adma.200903783 ↗
13. Wei H, Wang E (2008) Fe3O4 magnetic nanoparticles as peroxidase mimetics and their applications in H2O2 and glucose detection. Anal Chem 80:2250–225410.1021/ac702203f ↗
14. Gao L, Zhuang J, Nie L, Zhang J, Zhang Y, Gu N, Wang T, Feng J, Yang D, Perrett S, Yan X (2007) Intrinsic peroxidase-like activity of ferromagnetic nanoparticles. Nat Nanotechnol 2:577–58310.1038/nnano.2007.260 ↗
15. Yang X, Zhang X, Ma Y, Huang Y, Wang Y, Chen Y (2009) Superparamagnetic graphene oxide-Fe3O4 nanoparticles hybrid for controlled targeted drug carriers. J Mater Chem 19:2710–271410.1039/b821416f ↗
16. Wang YJ, Wilkinson DP, Zhang J (2011) Noncarbon support materials for polymer electrolyte membrane fuel cell electrocatalysts. J Chem Rev 111:7625–765110.1021/cr100060r ↗
17. Yousefinejad S, Rasti H, Hajebi M, Kowsari M, Sadravi S, Honarasa F (2017) Design of C-dots/Fe3O4 magnetic nanocomposite as an efficient newnanozyme and its application for determination of H2O2 in nanomolarlevel. Sens Actuators B Chem 247:691–69610.1016/j.snb.2017.02.145 ↗
18. Zhang W, Wu X, Hu J, Guo Y, Wan L (2008) Carbon coated Fe3O4 nanospindles as a superior anode material for lithium-ion batteries. Adv Funct Mater 18:3941–394610.1002/adfm.200801386 ↗
19. Wu W, Yang S, Sun Y, Parvez K, Feng X, Muullen K (2012) 3D nitrogen-doped graphene aerogel-supported Fe3O4 nanoparticles as efficient electrocatalysts for the oxygen reduction reaction. J Am Chem Soc 134:9082–908510.1021/ja3030565 ↗
20. Yang G, Li Y, Rana RK, Zhu JJ (2013) Pt-Au/nitrogen-doped graphene nanocomposites for enhanced electrochemical activities. J Mater Chem A 1:1754–176210.1039/C2TA00776B ↗
21. Vranish J, Ancona M, Oh E, Susumu K, Medintz I (2017) Enhancing coupled enzymatic activity by conjugating one enzyme to a nanoparticle. Nanoscale 9:5172–518710.1039/C7NR00200A ↗
22. Niemeyer CM (2010) Semisynthetic DNA-protein conjugates for biosensing and nanofabrication. Angew Chem Int Ed 49:1200–121610.1002/anie.200904930 ↗
23. Jonkheijm P, Weinrich D, Schröder H, Niemeyer CM, Waldmann H (2008) Oriented immobilization of farnesylated proteins by the ehiol-ene reaction. Angew Chem Int Ed 47:9618–964710.1002/anie.200801711 ↗
24. Fruk L, Kuhlmann J, Niemeyer CM (2009) Analysis of heme-reconstitution of apoenzymes by means of surface plasmon resonance. Chem Commun 2:230–23210.1039/B817206D ↗
25. Schröder H, Hoffmann L, Müller J, Alhorn P, Fleger M, Neyer A, Niemeyer CM (2009) Addressable microfluidic polymer chip for DNA-directed immobilization of oligonucleotide-tagged compounds. Small 5:1547–155210.1002/smll.200801016 ↗
26. Yang Y, Su P, Zheng K, Wang T, Song J, Yang Y (2016) A self-directed and reconstructible immobilization strategy: DNA directed immobilization of alkaline phosphatase for enzyme inhibition assays. RSC Adv 6:36849–3685610.1039/C6RA01621A ↗
27. Qu D, Zheng M, Du P, Zhou E, Zhang L, Li D, Tan H, Zhao Z, Xie Z, Sun Z (2013) Highly luminescent S, N co-doped graphene quantum dots with broad visible absorption bands for visible light photocatalysts. Nanoscale 5:12272–1227710.1039/c3nr04402e ↗
28. Deng Y, Qi D, Deng C, Zhang X, Zhao D (2008) Superparamagnetic high-magnetization microspheres with an Fe3O4@SiO2 core and perpendicularly aligned mesoporous SiO2 shell for removal of microcystins. J Am Chem Soc 130:28–2910.1021/ja0777584 ↗
29. He C, Wu S, Zhao N, Shi C, Liu E, Shi C, Liu J (2013) Carbon-encapsulated Fe3O4 nanoparticles as a high-rate lithium ion battery anode material. ACS Nano 7:4459–446910.1021/nn401059h ↗
30. Ma Z, Huang X, Dou S, Wu J, Wang S (2014) One-pot synthesis of Fe2O3 nanoparticles on nitrogen-doped graphene as advanced supercapacitor electrode materials. J Phys Chem C 118:17231–1723910.1021/jp502226j ↗
31. Chen S, Hai X, Chen XW, Wang JH (2014) In situ growth of silver nanoparticles on graphene quantum dots for ultrasensitive colorimetric detection of H2O2 and glucose. Anal Chem 86:6689–669410.1021/ac501497d ↗
32. Cao X, Li S, Chen L, Ding H, Xu H, Huang Y, Li J, Liu N, Cao W, Zhu Y, Shen B, Shao N (2009) Combining use of a panel of ssDNA aptamers in the detection of staphylococcus aureus. Nucleic Acids Res 37:4621–462810.1093/nar/gkp489 ↗
33. Sefah K, Shangguan D, Xiong X, O’Donoghue MB, Tan W (2010) Development of DNA aptamers using cell-SELEX. Nat Protoc 5:116910.1038/nprot.2010.66 ↗
34. Carlsson N, Borde A, Wölfel S, Kerman B, Larsson A (2011) Quantification of protein concentration by the Bradford method in the presence of pharmaceutical polymers. Anal Biochem 1:116–12110.1016/j.ab.2010.12.026 ↗
35. Rodrigues RC, Ortiz C, Berenguer-Murcia A, Torres R, Fernandez-Lafuente R (2013) Modifying enzyme activity and selectivity by immobilization. Chem Soc Rev 42:6290–630710.1039/C2CS35231A ↗
36. Rueda N, dos Santos J, Ortiz C, Torres R, Barbosa O, Rodrigues RC, Berenguer-Murcia A, Fernandez-Lafuente R (2016) Chemical modification in the design of immobilized enzyme biocatalysts: drawbacks and opportunities. Chem Rec 16:1436–145510.1002/tcr.201600007 ↗
37. Song J, Lei T, Yang Y, Wu N, Su P, Yang Y (2018) Attachment of enzymes to hydrophilic magnetic nanoparticles through DNA-directed immobilization with enhanced stability and catalytic activity. New J Chem 42:8458–846810.1039/C8NJ00426A ↗
38. Josephy PD, Eling T, Mason RP (1982) The horseradish peroxidase-catalyzed oxidation of 3,5,3′,5′-tetramethylbenzidine. Free radical and charge-transfer complex intermediates. J Biol Chem 257:3669–367510.1016/S0021-9258(18)34832-4 ↗
39. Gao L, Wu J, Gao D (2011) Enzyme-controlled self-assembly and transformation of nanostructures in a tetramethylbenzidine/horseradish peroxidase/H2O2 system. ACS Nano 5:6736–674210.1021/nn2023107 ↗
40. Bonnet G, Krichevsky O, Libchaber A (1998) Kinetics of conformational fluctuations in DNA hairpin-loops. PNAS 95:8602–860610.1073/pnas.95.15.8602 ↗
41. Seeman NC (2007) Structural DNA nanotechnology: an overview. Mol Biol 3:246–257
42. Rädler JO, Koltover I, Salditt T, Safinya CR (1997) Structure of DNA-cationic liposome complexes: DNA intercalation in multilamellar membranes in distinct interhelical packing regimes. Science 275:810–81410.1126/science.275.5301.810 ↗
43. Yoshimoto M, Miyazaki Y, Sato M, Fukunaga K, Kuboi R (2004) Mechanism for high stability of liposomal glucose oxidase to inhibitor hydrogen peroxide produced in prolonged glucose oxidation. Bioconjugate Chem 5:1055–106110.1021/bc049909n ↗
44. Yoshimoto M, Takaki N, Yamasaki M (2010) Catalase-conjugated liposomes encapsulating glucose oxidase for controlled oxidation of glucose with decomposition of hydrogen peroxide produced. Colloids Surf B 2:403–40810.1016/j.colsurfb.2010.05.006 ↗
45. Song Y, Wang X, Zhao C, Qu K, Ren J, Qu X (2010) Label-free colorimetric detection of single nucleotide polymorphism by using single-walled carbon nanotube intrinsic peroxidase-like activity. Chem Eur J 16:3617–362110.1002/chem.200902643 ↗
46. Wu H, Liu Y, Li M, Chong Y, Zeng M (2015) Size-dependent tuning of horseradish peroxidase bioreactivity by gold nanoparticles. Nanoscale 10:4505–451310.1039/C4NR07056A ↗
47. Wu C, Lee W, YangY KFH (2011) Size-modulated catalytic activity of enzyme-nanoparticle conjugates: a combined kinetic and theoretical study. Chem Commun 47:7446–744810.1039/c1cc11020a ↗
48. Kang M, Roberts C, Cheng Y, Chang CA (2011) Gating and intermolecular interactions in ligand-protein association: coarse-grained modeling of HIV-1 protease. J Chem Theory Comput 10:3438–344610.1021/ct2004885 ↗
49. Song J, Su P, Yang Y, Wang T, Yang Y (2016) DNA directed immobilization enzyme on polyamidoamine tethered magnetic composites with high reusability and stability. J Mater Chem B 4:5873–588210.1039/C6TB01857B ↗
50. Wu Q, Wang X, Liao C, Wei Q, Wang Q (2015) Microgel coating of magnetic nanoparticles via bienzyme-mediated free-radical polymerization for colorimetric detection of glucose. Nanoscale 7:16578–1658210.1039/C5NR05716G ↗
51. Yang Y, Zhang R, Zhou B, Song J, Su P, Yang Y (2017) High activity and convenient ratio control: DNA-directed coimmobilization of multiple enzymes on multifunctionalized magnetic nanoparticles. ACS Appl Mater Interfaces 9:37254–3726310.1021/acsami.7b08553 ↗