journal article·2019-06

G-protein-coupled receptors function as logic gates for nanoparticle binding using systems and synthetic biology approach

Aman Chandra Kaushik, Xueying Mao, Cheng-Dong Li, Yan Li, Dong-Qing Wei, Shakti Sahi

Journal of Materials Research· Volume 34· Issue 11
Publisher page

Abstract

G-protein-coupled receptor 142 (GPR142) belongs to rhodopsin family. GPR142 and GPR119, both Gq-coupled receptors, are expressed in pancreatic β cells of pancreas; their activation eventually leads to triggering of insulin secretion. In this paper, through a systems and synthetic biology approach, the effect of a common hit compound has been investigated in GPR142 and GPR119 pathways. This hit that has the potential to be developed as a lead for nanodrug was obtained through high-throughput virtual screening. The hit compound was further docked with nanoparticles (GOLD, SPION, and CeO2). The probable effect of this potential hit on insulin secretion in type 2 diabetes and its dynamic behavior was explored. Kinetic simulation was performed for cross-validation of its role in both the pathways. This study opens up a probable avenue in therapy of type 2 diabetes through regulation of GPR142 and GPR119 receptors. The biological circuit constructed may further have an application as a modulator to control the up- and downregulation of the biochemical pathway and can be implemented as sensors or nanochips for therapy.
Source: expertdata · Quality: candidate unverified · Source record ↗

Research context

OpenAlex topics: Computational Drug Discovery Methods · Gene Regulatory Network Analysis · thermodynamics and calorimetric analyses

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (61)

Show source-provided references
1. 10.1093/bioinformatics/btp22310.1093/bioinformatics/btp223 ↗
2. Sci. Technol. Jpn. · 1996 · 59 · 34
3. 10.1016/j.cell.2009.12.02810.1016/j.cell.2009.12.028 ↗
4. 10.1093/nar/gkm32110.1093/nar/gkm321 ↗
5. 10.1098/rsif.2014.096210.1098/rsif.2014.0962 ↗
6. 10.1021/ci300537910.1021/ci3005379 ↗
7. 10.1158/0008-5472.CAN-13-336710.1158/0008-5472.CAN-13-3367 ↗
8. 2010 · 84 · 415
9. Nucleic Acids Res. · 2013 · 42 · D199
10. 10.1016/S0014-5793(03)01196-710.1016/S0014-5793(03)01196-7 ↗
11. Nucleic Acids Res. · 2008 · 37 · D680
12. 10.3389/fchem.2018.0002310.3389/fchem.2018.00023 ↗
13. 10.1080/07391102.2017.133523410.1080/07391102.2017.1335234 ↗
14. 10.1038/nature0548210.1038/nature05482 ↗
15. 10.1504/IJBRA.2017.08585910.1504/IJBRA.2017.085859 ↗
16. 10.1145/545197.54519910.1145/545197.545199 ↗
17. Br. J. Pharmacol. · 2008 · 153 · S7610.1038/sj.bjp.0707529 ↗
18. 10.1007/s11693-015-9163-010.1007/s11693-015-9163-0 ↗
19. 10.1093/bioinformatics/9.5.56310.1093/bioinformatics/9.5.563 ↗
20. 2017
21. Genetics · 1998 · 149 · 163310.1093/genetics/149.4.1633 ↗
22. 10.1109/JPROC.2008.92545810.1109/JPROC.2008.925458 ↗
23. 2017
24. 10.1038/s41598-018-27580-110.1038/s41598-018-27580-1 ↗
25. Silico Biol. · 2007 · 7 · 81
26. 10.1016/j.snb.2017.06.08310.1016/j.snb.2017.06.083 ↗
27. 10.1016/S1478-5382(03)02370-910.1016/S1478-5382(03)02370-9 ↗
28. 10.1007/s12035-017-0546-y10.1007/s12035-017-0546-y ↗
29. 10.1021/ci700006f10.1021/ci700006f ↗
30. 10.3177/jnsv.58.41510.3177/jnsv.58.415 ↗
31. 10.1093/nar/gkq36710.1093/nar/gkq367 ↗
32. 10.1093/bioinformatics/btl48510.1093/bioinformatics/btl485 ↗
33. 10.1021/ja036030u10.1021/ja036030u ↗
34. 10.1111/j.1747-0285.2005.00327.x10.1111/j.1747-0285.2005.00327.x ↗
35. 10.1093/nar/gks123910.1093/nar/gks1239 ↗
36. 10.1021/jm050540c10.1021/jm050540c ↗
37. 10.1093/nar/gks45910.1093/nar/gks459 ↗
38. 10.1016/j.bmc.2005.12.03210.1016/j.bmc.2005.12.032 ↗
39. 10.1093/nar/gkn28210.1093/nar/gkn282 ↗
40. 10.1021/jm030643010.1021/jm0306430 ↗
41. 1997
42. Nucleic Acids Res. · 2011 · 40 · D109
43. 10.1021/jm030644s10.1021/jm030644s ↗
44. 10.1021/jm051256o10.1021/jm051256o ↗
45. Nucleic Acids Res. · 2009 · 38 · D355
46. Nat. Rev. Genet. · 2010 · 11 · 367
47. 10.1093/nar/gkm88210.1093/nar/gkm882 ↗
48. 10.1038/nature0125410.1038/nature01254 ↗
49. 10.1093/nar/gkj10210.1093/nar/gkj102 ↗
50. 10.1038/ng86910.1038/ng869 ↗
51. 10.1093/nar/gkh06310.1093/nar/gkh063 ↗
52. 10.1126/science.106988310.1126/science.1069883 ↗
53. 10.1093/nar/30.1.4210.1093/nar/30.1.42 ↗
54. 10.1063/1.134570210.1063/1.1345702 ↗
55. 10.1093/nar/28.1.2710.1093/nar/28.1.27 ↗
56. IEEE Des. Test Comput. Mag. · 2012 · 29 · 7
57. 2002 · 91
58. 10.1073/pnas.02264229910.1073/pnas.022642299 ↗
59. 10.1016/S0168-9525(97)01223-710.1016/S0168-9525(97)01223-7 ↗
60. 10.1126/science.283.5400.38110.1126/science.283.5400.381 ↗
61. 10.1093/nar/gkq31810.1093/nar/gkq318 ↗