journal article·2019-12-04Open access

Polymerization-sensitive switch-on monomer for terminal transferase activity assay

Bhagwan S. Batule, Chang Yeol Lee, Ki Soo Park, Hyun Gyu Park

Abstract

We herein describe a simple but efficient method for the determination of terminal transferase (TdT) activity, which relies on our finding that Fe(III)-quenched boron-dipyrromethene (BODIPY)-ATP is utilized as a switch-on monomer for polymerization and enables the facile synthesis of fluorescence oligonucleotides without additional, post-processing steps. As TdT carries out the synthesis of DNA by adding the monomers into growing chains, Fe(III) is displaced from BODIPY with the release of pyrophosphate group, which consequently leads to the generation of highly fluorescent long oligonucleotides. With this strategy, we selectively detected the TdT activity with high sensitivity. In addition, its practical applicability was successfully demonstrated by determining TdT activities in human serum.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Advanced biosensing and bioanalysis techniques · DNA and Nucleic Acid Chemistry · Luminescence and Fluorescent Materials

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Department of Chemical and Biomolecular Engineering (BK21+ Program), KAIST

Department of Biological Engineering, College of Engineering, Konkuk University

Funding

Mid-career Researcher Support Program · Bio-Synergy Research Project · Ministry of Science and ICT (MSIT) of Korea · Center for BioNano Health-Guard · MSIT of Korea

References (24)

Show source-provided references
1. 10.1073/pnas.24272919910.1073/pnas.242729199 ↗
2. 10.1073/pnas.040113810110.1073/pnas.0401138101 ↗
3. 10.1039/C5CC09131D10.1039/C5CC09131D ↗
4. 10.1038/nmeth.291810.1038/nmeth.2918 ↗
5. 10.1093/nar/23.11.184510.1093/nar/23.11.1845 ↗
6. 10.1021/jo502079910.1021/jo5020799 ↗
7. 10.1039/C5CC01387A10.1039/C5CC01387A ↗
8. 10.1021/ol300260q10.1021/ol300260q ↗
9. 10.1039/C2JM14920F10.1039/C2JM14920F ↗
10. 10.1007/s11705-014-1445-710.1007/s11705-014-1445-7 ↗
11. 10.1016/j.bios.2013.12.06510.1016/j.bios.2013.12.065 ↗
12. 10.1246/cl.15063110.1246/cl.150631 ↗
13. 10.1016/j.bios.2015.09.02210.1016/j.bios.2015.09.022 ↗
14. 10.1093/abbs/gmr11510.1093/abbs/gmr115 ↗
15. 10.1074/jbc.M10527220010.1074/jbc.M105272200 ↗
16. 10.1039/C8SC01641K10.1039/C8SC01641K ↗
17. 10.1021/acs.analchem.7b0349010.1021/acs.analchem.7b03490 ↗
18. McCaffrey R, Lillquist A, Sallan S, et al. Clinical utility of leukemia cell terminal transferase measurements. Cancer Res. 1981;41:4814–4820.
19. 10.1039/C7CC05485H10.1039/C7CC05485H ↗
20. 10.1039/C5CC02790J10.1039/C5CC02790J ↗
21. 10.1016/j.bios.2014.05.03810.1016/j.bios.2014.05.038 ↗
22. 10.1039/C5CC01517K10.1039/C5CC01517K ↗
23. 10.1039/C5AY00423C10.1039/C5AY00423C ↗
24. 10.1039/c4cc03103b10.1039/c4cc03103b ↗