journal article·2011

Free energy analysis of vesicle-to-bicelle transformation

Wataru Shinoda, Takenobu Nakamura, Steven O. Nielsen

Soft Matter· Volume 7· Issue 19
Publisher page

Abstract

A lipid assembly composed of a finite number of lipid molecules can have multiple metastable structures. Using a series of coarse-grained molecular dynamics simulations, we evaluate the free energy profile for the transformation of a small vesicle to a disk-like structure called a bicelle. This free energy is found to be lower than that predicted from continuum elastic theory. For small unilamellar vesicles, the relaxation of the internal structure of the membrane is suggested to play an important role in lowering the free energy barrier for the vesicle-to-bicelle transformation.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Lipid Membrane Structure and Behavior · Supramolecular Self-Assembly in Materials · RNA Interference and Gene Delivery

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (36)

Show source-provided references
1. Fromherz · Chem. Phys. Lett. · 1983 · 94 · 25910.1016/0009-2614(83)87083-3 ↗
2. Seifert · Adv. Phys. · 1997 · 46 · 1310.1080/00018739700101488 ↗
3. Marrink · Biochim. Biophys. Acta, Biomembr. · 2009 · 1788 · 14910.1016/j.bbamem.2008.10.006 ↗
4. Shinoda · J. Phys. Chem. B · 2010 · 114 · 683610.1021/jp9107206 ↗
5. Shinoda · Mol. Simul. · 2007 · 33 · 2710.1080/08927020601054050 ↗
6. Shinoda · Soft Matter · 2008 · 4 · 245410.1039/b808701f ↗
7. DeVane · J. Chem. Theory Comput. · 2009 · 5 · 211510.1021/ct800441u ↗
8. Klein · Science · 2008 · 321 · 79810.1126/science.1157834 ↗
9. Chiu · J. Phys. Chem. B · 2010 · 114 · 639410.1021/jp9117375 ↗
10. Devane · J. Phys. Chem. B · 2010 · 114 · 638610.1021/jp9117369 ↗
11. Kucerka · J. Membr. Biol. · 2005 · 208 · 19310.1007/s00232-005-7006-8 ↗
12. Martyna · J. Chem. Phys. · 1992 · 97 · 263510.1063/1.463940 ↗
13. Andersen · J. Chem. Phys. · 1980 · 72 · 238410.1063/1.439486 ↗
14. Parrinello · J. Appl. Phys. · 1981 · 52 · 718210.1063/1.328693 ↗
15. Martyna · Mol. Phys. · 1996 · 87 · 111710.1080/00268979600100761 ↗
16. Shinoda · J. Comput. Chem. · 2003 · 24 · 92010.1002/jcc.10249 ↗
17. Chiu · J. Chem. Phys. · 2010 · 132 · 05470610.1063/1.3308625 ↗
18. Sonne · J. Chem. Phys. · 2005 · 122 · 12490310.1063/1.1862624 ↗
19. Karatekin · Biophys. J. · 2003 · 84 · 173410.1016/S0006-3495(03)74981-9 ↗
20. Zhelev · Biochim. Biophys. Acta, Biomembr. · 1993 · 1147 · 8910.1016/0005-2736(93)90319-U ↗
21. Genco · Biochim. Biophys. Acta, Biomembr. · 1993 · 1149 · 1010.1016/0005-2736(93)90019-V ↗
22. Fromherz · Faraday Discuss. Chem. Soc. · 1986 · 81 · 3910.1039/DC9868100039 ↗
23. Chernomordik · Biochim. Biophys. Acta, Biomembr. · 1985 · 812 · 64310.1016/0005-2736(85)90257-3 ↗
24. Harbich · Z. Naturforsch · 1979 · 34a · 106310.1515/zna-1979-0905 ↗
25. Taupin · Biochemistry · 1975 · 14 · 477110.1021/bi00692a032 ↗
26. Srividya · J. Phys. Chem. B · 2008 · 112 · 714710.1021/jp7119203 ↗
27. Jiang · Biophys. J. · 2004 · 87 · 18210.1529/biophysj.103.031054 ↗
28. Leontiadou · Biophys. J. · 2004 · 86 · 215610.1016/S0006-3495(04)74275-7 ↗
29. Hafskjold · Phys. Rev. E: Stat. Phys., Plasmas, Fluids, Relat. Interdiscip. Top. · 2002 · 66 · 01120310.1103/PhysRevE.66.011203 ↗
30. Brannigan · Biophys. J. · 2006 · 90 · 150110.1529/biophysj.105.075838 ↗
31. Rawicz · Biophys. J. · 2000 · 79 · 32810.1016/S0006-3495(00)76295-3 ↗
32. Marsh · Chem. Phys. Lipids · 2006 · 144 · 14610.1016/j.chemphyslip.2006.08.004 ↗
33. Tolpekina · J. Chem. Phys. · 2004 · 121 · 801410.1063/1.1796254 ↗
34. Tolpekina · J. Chem. Phys. · 2004 · 121 · 1206010.1063/1.1815296 ↗
35. Wang · J. Chem. Phys. · 2005 · 123 · 15470110.1063/1.2060666 ↗
36. Wohlert · J. Chem. Phys. · 2006 · 124 · 15490510.1063/1.2171965 ↗