journal article·2019Open access

Morphological analysis of chiral rod clusters from a coarse-grained single-site chiral potential

B. J. Sutherland, S. W. Olesen, H. Kusumaatmaja, J. W. R. Morgan, D. J. Wales

Soft Matter· Volume 15· Issue 40

Abstract

We present a coarse-grained single-site potential for simulating chiral interactions, with adjustable strength, handedness, and preferred twist angle. As an application, we perform basin-hopping global optimisation to predict the favoured geometries for clusters of chiral rods. The morphology phase diagram based upon these predictions has four distinct families, including previously reported structures for potentials that introduce chirality based on shape, such as membranes and helices. The transition between these two configurations reproduces some key features of experimental results for fd bacteriophage. The potential is computationally inexpensive, intuitive, and versatile; we expect it will be useful for large scale simulations of chiral molecules. For chiral particles confined in a cylindrical container we reproduce the behaviour observed for fusilli pasta in a jar. Hence this chiropole potential has the capability to provide insight into structures on both macroscopic and molecular length scales.
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Research context

OpenAlex topics: Bacteriophages and microbial interactions · Methane Hydrates and Related Phenomena · Fluid Dynamics Simulations and Interactions

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Physical & Theoretical Chemistry Laboratory

Oxford OX1 3QZ

UK

Harvard T. H. Chan School of Public Health

Boston

USA

Department of Physics

University of Durham

Durham

University Chemical Laboratories

University of Cambridge

Cambridge

Funding

Engineering and Physical Sciences Research Council · FP7 Ideas: European Research Council · Williams College

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