journal article·2009-03-04

Synthon Competition and Cooperation in Molecular Salts of Hydroxybenzoic Acids and Aminopyridines

Bipul Sarma, Naba K. Nath, Balakrishna R. Bhogala, Ashwini Nangia

Crystal Growth & Design· Volume 9· Issue 3
Publisher page

Abstract

Meta- and para-substituted hydroxy-benzoic acids and amino-pyridines were cocrystallized and characterized by X-ray diffraction. Proton transfer from the COOH to pyridyl N acceptor (PyN) occurred in 11 molecular salts ( 1 − 11 ) leading to a PyNH + ··· − OOC ionic synthon in 10 structures and a PyNH + ···O═C hydrogen bond in one structure. Competition and cooperation between COO −, OH, NH 2, PyNH +, and H 2 O functional groups for the observed hydrogen bond synthons are examined in 11 structures, of which 4 are hydrates. The second and third highest occurring synthons are NH 2 ···OH, NH 2 ··· − OOC, and OH··· − OOC in nine, eight, and eight structures, respectively. Hydrogen bonding of water to/from COO −, OH, and NH 2 groups is present in hydrates 1, 5, 7, and 9 . There are no systematic studies on our knowledge on hydrogen bond competition and interplay when the above four common functional groups are present in the same crystal structure. Synthons in this study are compared with statistics extracted from the Cambridge Structural Database to summarize trends and predict hydrogen bonding in new cocrystal and salt structures. The term molecular salt is suggested for ionic complexes derived from organic acids and bases. Acidity constants of benzoic acids and amino-pyridines were calculated in the gas phase, MeOH, and water using the SPARC program. The Δp K a rule is found to be inadequate for predicting neutral or ionic O−H···N/N + −H···O − hydrogen bonds when other polar functional groups are also present in the system. The persistence of PyNH + ··· − OOC ionic synthons is ascribed to the presence of OH and NH 2 groups in the same supramolecular system. Δp K a values are in the range 1−5 in the gas phase and water but negative in MeOH (−1 to −6), on the whole lower than the p K a difference of >3 that is generally accepted as a condition for proton transfer. Our results are at variance with a recent paper in Cryst. Growth Des. ( 2008, 8, 4533−4545) wherein neutral COOH···NPy heterosynthon occurs with 78% probability when competition in the presence of phenol OH group only was analyzed.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Crystallography and molecular interactions · Crystallization and Solubility Studies · Crystal structures of chemical compounds

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

School of Chemistry, University of Hyderabad, Hyderabad 500 046, India

References (87)

Show source-provided references
1. Desiraju G. R. · Angew. Chem., Int. Ed. Engl. · 1995 · 34 · 231110.1002/anie.199523111 ↗
2. Bhogala B. R. · Cryst. Growth Des. · 2002 · 2 · 32510.1021/cg025537y ↗
3. Bhogala B. R. · Cryst. Growth Des. · 2005 · 5 · 168310.1021/cg058012p ↗
4. Shan N. · New J. Chem. · 2003 · 27 · 36510.1039/b208686g ↗
5. Walsh R. D. B. · Chem. Commun. · 2003 · 18610.1039/b208574g ↗
6. Bhogala B. R. · Cryst. Growth Des. · 2003 · 3 · 54710.1021/cg034047i ↗
7. Almarsson Ö. · Chem. Commun. · 2004 · 188910.1039/b402150a ↗
8. Aakeröy C. B. · CrystEngComm · 2005 · 7 · 43910.1039/b505883j ↗
9. Sharma C. V. K. · Chem. Commun. · 2000 · 102310.1039/b002084m ↗
10. Tomura M. · Chem. Lett. · 2001 · 53210.1246/cl.2001.532 ↗
11. Shan N. · Tetrahedron Lett. · 2002 · 43 · 872110.1016/S0040-4039(02)02140-8 ↗
12. Olenik B. · Cryst. Growth Des. · 2003 · 3 · 18310.1021/cg034003+ ↗
13. Bond A. D. · Chem. Commun. · 2003 · 25010.1039/b208904a ↗
14. Varughese S. · Chem. Eur. J. · 2006 · 12 · 159710.1002/chem.200500570 ↗
15. Du M. · Cryst. Growth Des. · 2006 · 6 · 11410.1021/cg050229w ↗
16. Grossel C. M. · CrystEngComm · 2006 · 8 · 12310.1039/b516387k ↗
17. Bhogala B. R. · New J. Chem. · 2008 · 32 · 80010.1039/b800293b ↗
18. Santra R. · New J. Chem. · 2008 · 32 · 167310.1039/b803280g ↗
19. Ermer O. · J. Chem. Soc., Perkin Trans. 2 · 1994 · 92510.1039/P29940000925 ↗
20. Hanessian S. · J. Am. Chem. Soc. · 1995 · 117 · 763010.1021/ja00134a007 ↗
21. Allen F. H. · J. Am. Chem. Soc. · 1997 · 119 · 347710.1021/ja964254p ↗
22. Vangala V. R. · J. Am. Chem. Soc. · 2003 · 125 · 1449510.1021/ja037227p ↗
23. Hanessian S. · Chem. Eur. J. · 1999 · 5 · 216910.1002/(SICI)1521-3765(19990702)5:7<2169::AID-CHEM2169>3.0.CO;2-E ↗
24. Dey A. · Chem. Commun. · 2004 · 252810.1039/b407510b ↗
25. Etter M. C. · Acc. Chem. Res. · 1990 · 23 · 12010.1021/ar00172a005 ↗
26. Etter M. C. · J. Phys. Chem. · 1991 · 95 · 460110.1021/j100165a007 ↗
27. Caballero N. A. · Biophys. Chem. · 2006 · 124 · 15510.1016/j.bpc.2006.06.007 ↗
28. Kawase M. · Anticancer Res. · 1998 · 18 · 1069
29. Vishweshwar P. · J. Org. Chem. · 2002 · 67 · 55610.1021/jo0162484 ↗
30. Vishweshwar P. · Cryst. Growth Des. · 2003 · 3 · 78310.1021/cg034037h ↗
31. Boenigk D. · J. Am. Chem. Soc. · 1988 · 110 · 213510.1021/ja00215a021 ↗
32. Cowan J. A. · Acta Crystallogr. · 2003 · 59 · 79410.1107/S0108768103024984 ↗
33. Steiner T. · Angew. Chem., Int. Ed. · 2001 · 40 · 265110.1002/1521-3773(20010716)40:14<2651::AID-ANIE2651>3.0.CO;2-2 ↗
34. Parkin A. · New. J. Chem. · 2004 · 28 · 71810.1039/b315515c ↗
35. Aakeröy C. B. · Cryst. Growth Des. · 2006 · 6 · 47410.1021/cg050391z ↗
36. Schmidtmann M. · CrystEngComm · 2008 · 10 · 17710.1039/B709110A ↗
37. Childs S. L. · Cryst. Growth Des. · 2007 · 7 · 129110.1021/cg060742p ↗
38. Childs S. L. · Mol. Pharmaceutics · 2007 · 4 · 32310.1021/mp0601345 ↗
39. Smith G. · Aust. J. Chem. · 2003 · 56 · 70710.1071/CH02163 ↗
40. Smith G. · Acta Crystallogr. · 2004 · 60 · o57510.1107/S0108767304095704 ↗
41. Meng X.-G. · Acta Crystallogr. · 2007 · 63 · o667
42. Li S.-L. · Acta Crystallogr. · 2006 · 62 · o1173
43. Yang D.-J. · Acta Crystallogr. · 2006 · 62 · o5127
44. Lynch D. E. · Aust. J. Chem. · 1994 · 47 · 109710.1071/CH9941097 ↗
45. Smith G. · Aust. J. Chem. · 2001 · 54 · 16510.1071/CH01010 ↗
46. Braverman M. A. · Acta Crystallogr. · 2007 · 63 · o3167
47. Gellert R. W. · Acta Crystallogr. · 1988 · 44 · 311
48. Wang Z.-L. · Acta Crystallogr. · 2007 · 63 · o1579
49. Kobayashi N. · Bull. Chem. Soc. Jpn. · 2003 · 76 · 135110.1246/bcsj.76.1351 ↗
50. Karle I. · J. Chem. Cryst. · 2003 · 33 · 72710.1023/A:1026151222486 ↗
51. Bertolasi V. · Acta Crystallogr. · 2001 · 57 · 59110.1107/S010876810100814X ↗
52. Allen F. H. · Acta Crystallogr. · 2002 · 58 · 38010.1107/S0108768102003890 ↗
53. bCambridge Structural Database, ConQuest 1.10, November 2007 release,January 2008 update.www.ccdc.cam.ac.uk.
54. Coe B. J. · J. Am. Chem. Soc. · 2005 · 127 · 328410.1021/ja0431758 ↗
55. Black S. N. · J. Pharma Sci. · 2007 · 96 · 105310.1002/jps.20927 ↗
56. McKay S. E. · CrystEngComm · 2006 · 8 · 12910.1039/b516674h ↗
57. Desiraju G. R. · CrystEngComm · 2003 · 5 · 46610.1039/b313552g ↗
58. Dunitz J. D. · CrystEngComm · 2003 · 5 · 50610.1039/b315687g ↗
59. Bond A. D. · CrystEngComm · 2007 · 9 · 83310.1039/b708112j ↗
60. Vishweshwar P. · J. Phys. Chem. A · 2004 · 108 · 940610.1021/jp0476848 ↗
61. Silverstein R. M. · 2004
62. Bernstein J. · Angew. Chem., Int. Ed. Engl. · 1995 · 34 · 155510.1002/anie.199515551 ↗
63. Rafilovich M. · Cryst. Growth Des. · 2007 · 7 · 177710.1021/cg0701325 ↗
64. Wenger M. · Cryst. Growth Des. · 2008 · 8 · 159510.1021/cg7008732 ↗
65. Sarma B. · Cryst. Growth Des. · 2008 · 8 · 454610.1021/cg800585d ↗
66. Johnson S. L. · J. Phys. Chem. · 1965 · 69 · 7410.1021/j100885a013 ↗
67. Bhogala B. R. · CrystEngComm · 2005 · 7 · 55110.1039/b509162d ↗
68. Rived F. · Anal. Chim. Acta · 1998 · 374 · 30910.1016/S0003-2670(98)00418-8 ↗
69. Takasuka M. · J. Chem. Soc., Perkin Trans. · 1982 · 2 · 106110.1039/p29820001061 ↗
70. bCSD refcodes BIXGIY, BIXGIY02, BIXGIY03, BIXGIY04.
71. Babu N. J. · Chem Asian J. · 2008 · 3 · 112210.1002/asia.200800070 ↗
72. Desiraju G. R. · Angew. Chem., Int. Ed. · 2007 · 46 · 834210.1002/anie.200700534 ↗
73. Krishna Murthy H. M. · Acta Crystallogr. · 1979 · 35 · 26210.1107/S0567740879003253 ↗
74. Erdemgil F. Z. · Talanta · 2007 · 72 · 48910.1016/j.talanta.2006.11.007 ↗
75. Hilal S. H. · Quant. Struct. Act. Rel. · 1995 · 14 · 34810.1002/qsar.19950140405 ↗
76. Hilal S. H. · Talanta · 1996 · 43 · 60710.1016/0039-9140(95)01789-5 ↗
77. Hilal S. H. · J. Phys. Org. Chem. · 1994 · 7 · 12210.1002/poc.610070304 ↗
78. Shattock T. R. · Cryst. Growth Des. · 2008 · 8 · 453310.1021/cg800565a ↗
79. Stahl P. H. · 2002
80. Gould P. L. · Int. J. Pharm. · 1986 · 33 · 20110.1016/0378-5173(86)90055-4 ↗
81. Morissette S. L. · Adv. Drug Delivery Rev. · 2004 · 46 · 27510.1016/j.addr.2003.10.020 ↗
82. Banerjee R. · Cryst. Growth Des. · 2005 · 5 · 229910.1021/cg050125l ↗
83. Sheldrick G. M. · 1997
84. Sheldrick G. M. · 1997
85. Spek A. L. · 2002
86. Spek A. L. · J. Appl. Crystallogr. · 2003 · 36 · 710.1107/S0021889802022112 ↗
87. Barbour, L. J.X-Seed, Graphical Interface to SHELX-97 and POVRay;University of Missouri-Columbia:Columbia, MO, 1999.