journal article·2025Open access

Multi-Stage Hierarchical Feature Extraction for Efficient 3D Medical Image Segmentation

Jion Kim, Jayeon Kim, Byeong-Seok Shin

Computers, Materials & Continua· Volume 83· Issue 3

Abstract

Research has been conducted to reduce resource consumption in 3D medical image segmentation for diverse resource-constrained environments. However, decreasing the number of parameters to enhance computational efficiency can also lead to performance degradation. Moreover, these methods face challenges in balancing global and local features, increasing the risk of errors in multi-scale segmentation. This issue is particularly pronounced when segmenting small and complex structures within the human body. To address this problem, we propose a multi-stage hierarchical architecture composed of a detector and a segmentor. The detector extracts regions of interest (ROIs) in a 3D image, while the segmentor performs segmentation in the extracted ROI. Removing unnecessary areas in the detector allows the segmentation to be performed on a more compact input. The segmentor is designed with multiple stages, where each stage utilizes different input sizes. It implements a stage-skipping mechanism that deactivates certain stages using the initial input size. This approach minimizes unnecessary computations on segmenting the essential regions to reduce computational overhead. The proposed framework preserves segmentation performance while reducing resource consumption, enabling segmentation even in resource-constrained environments.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Medical Image Segmentation Techniques

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (42)

Show source-provided references
1. Deep learning-enhanced image segmentation for medical diagnostics
2. DeepPoly: deep learning-based polyps segmentation and classification for autonomous colonoscopy examination10.1109/ACCESS.2023.3310541 ↗
3. U-net: convolutional networks for biomedical image segmentation
4. 3D U-Net: learning dense volumetric segmentation from sparse annotation
5. Huang · 2019 · 291
6. An improved 3D U-Net-based deep learning system for brain tumor segmentation using multi-modal MRI10.1007/s11042-024-19406-2 ↗
7. Attention is all you need
8. MedNeXt: transformer-driven scaling of ConvNets for medical image segmentation
9. Context-aware network fusing Transformer and V-Net for semi-supervised segmentation of 3D left atrium10.1016/j.eswa.2022.119105 ↗
10. nnFormer: volumetric medical image segmentation via a 3D Transformer10.1109/TIP.2023.3293771 ↗
11. E2ENet: dynamic sparse feature fusion for accurate and efficient 3D medical image segmentation
12. Energy efficiency in edge TPU vs. embedded GPU for computer-aided medical imaging segmentation and classification10.1016/j.engappai.2023.107298 ↗
13. Moving medical image analysis to GPU embedded systems: application to brain tumor segmentation10.1080/08839514.2020.1787678 ↗
14. Revolutionizing infectious disease management in low-resource settings: the impact of rapid diagnostic technologies and portable devices10.51594/ijarss.v6i7.1332 ↗
15. AVIVA: a telehealth tool to improve cervical cancer screening in resource-constrained settings10.1136/bmjgh-2023-012311 ↗
16. Efficient edge-AI models for robust ECG abnormality detection on resource-constrained hardware10.1007/s12265-024-10504-y ↗
17. LATUP-Net: a lightweight 3D attention U-Net with parallel convolutions for brain tumor segmentation10.1016/j.compbiomed.2024.109353 ↗
18. MALUNet: a multi-attention and light-weight unet for skin lesion segmentation
19. Unext: mlp-based rapid medical image segmentation network
20. Lightweight medical image segmentation network with multi-scale feature-guided fusion10.1016/j.compbiomed.2024.109204 ↗
21. V-net: fully convolutional neural networks for volumetric medical image segmentation
22. SwinBTS: a method for 3D multimodal brain tumor segmentation using swin Transformer10.3390/brainsci12060797 ↗
23. Płotka S, Chrabaszcz M, Biecek P. Swin SMT: global sequential modeling in 3D medical image segmentation. arXiv:2407.07514. 2024. doi:10.1007/978-3-031-72111-3.10.1007/978-3-031-72111-3_65 ↗
24. A ConvNet for the 2020s
25. A dual-branch network for ultrasound image segmentation10.1016/j.bspc.2024.107368 ↗
26. Cotr: efficiently bridging CNN and transformer for 3D medical image segmentation
27. SegFormer3D: an efficient Transformer for 3D medical image segmentation
28. UNETR++: delving into efficient and accurate 3D medical image segmentation10.1109/TMI.2024.3398728 ↗
29. Liao W, Zhu Y, Wang X, Pan C, Wang Y, Ma L. LightM-Unet: mamba assists in lightweight UNet for medical image segmentation. arXiv:2403.05246. 2024. doi:10.48550/arXiv.2403.05246.
30. Gu A, Dao T. Mamba: linear-time sequence modeling with selective state spaces. arXiv:2312.00752. 2023. doi:10.48550/arXiv.2312.00752.
31. Zhu X, Su W, Lu L, Li B, Wang X, Dai J. Deformable DETR: deformable transformers for end-to-end object detection. arXiv:2010.04159. 2020. doi:10.48550/arXiv.2010.04159.
32. Feature pyramid networks for object detection
33. Xception: deep learning with depthwise separable convolutions
34. Pointwise convolutional neural networks
35. Tao A, Sapra K, Catanzaro B. Hierarchical multi-scale attention for semantic segmentation. arXiv:2005.10821. 2020. doi:10.48550/arXiv.2005.10821.
36. Slim UNETR: scale hybrid Transformers to efficient 3D medical image segmentation under limited computational resources10.1109/TMI.2023.3326188 ↗
37. AMOS: a large-scale abdominal multi-organ benchmark for versatile medical image segmentation
38. Mask R-CNN
39. Optimization for medical image segmentation: theory and practice when evaluating with Dice score or Jaccard index10.1109/TMI.2020.3002417 ↗
40. Using the averaged Hausdorff distance as a performance measure in evolutionary multiobjective optimization10.1109/TEVC.2011.2161872 ↗
41. A review on CLAHE based enhancement techniques
42. Filtering techniques to remove noises from an image