journal article·2024Open access

Chinese Clinical Named Entity Recognition Using Multi-Feature Fusion and Multi-Scale Local Context Enhancement

Meijing Li, Runqing Huang, Xianxian Qi

Computers, Materials & Continua· Volume 80· Issue 2

Abstract

Chinese Clinical Named Entity Recognition (CNER) is a crucial step in extracting medical information and is of great significance in promoting medical informatization. However, CNER poses challenges due to the specificity of clinical terminology, the complexity of Chinese text semantics, and the uncertainty of Chinese entity boundaries. To address these issues, we propose an improved CNER model, which is based on multi-feature fusion and multi-scale local context enhancement. The model simultaneously fuses multi-feature representations of pinyin, radical, Part of Speech (POS), word boundary with BERT deep contextual representations to enhance the semantic representation of text for more effective entity recognition. Furthermore, to address the model’s limitation of focusing just on global features, we incorporate Convolutional Neural Networks (CNNs) with various kernel sizes to capture multi-scale local features of the text and enhance the model’s comprehension of the text. Finally, we integrate the obtained global and local features, and employ multi-head attention mechanism (MHA) extraction to enhance the model’s focus on characters associated with medical entities, hence boosting the model’s performance. We obtained 92.74%, and 87.80% F1 scores on the two CNER benchmark datasets, CCKS2017 and CCKS2019, respectively. The results demonstrate that our model outperforms the latest models in CNER, showcasing its outstanding overall performance. It can be seen that the CNER model proposed in this study has an important application value in constructing clinical medical knowledge graph and intelligent Q&A system.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Topic Modeling · Natural Language Processing Techniques · Biomedical Text Mining and Ontologies

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (32)

Show source-provided references
1. A clinical named entity recognition model using pretrained word embedding and deep neural networks10.1016/j.dajour.2024.100426 ↗
2. Barriers to the acceptance of electronic medical records by physicians from systematic review to taxonomy and interventions10.1186/1472-6963-10-231 ↗
3. Assistant diagnosis with Chinese electronic medical records based on CNN and BiLSTM with phrase-level and word-level attentions10.1186/s12859-020-03554-x ↗
4. A comprehensive study of named entity recognition in Chinese clinical text10.1136/amiajnl-2013-002381 ↗
5. Chinese clinical named entity recognition using residual dilated convolutional neural network with conditional random field10.1109/TNB.2019.2908678 ↗
6. Incorporating dictionaries into deep neural networks for the Chinese clinical named entity recognition10.1016/j.jbi.2019.103133 ↗
7. P. J. Gorinski et al., “Named entity recognition for electronic health records: A comparison of rule-based and machine learning approaches,” arXiv:1903.03985, 2019.
8. A study of machine-learning-based approaches to extract clinical entities and their assertions from discharge summaries10.1136/amiajnl-2011-000163 ↗
9. Improving large language models for clinical named entity recognition via prompt engineering
10. Long short-term memory10.1162/neco.1997.9.8.1735 ↗
11. Z. Huang, W. Xu, and K. Yu, “Bidirectional LSTM-CRF models for sequence tagging,” arXiv:1508.01991, 2015.
12. Chinese named entity recognition with character level BLSTM and soft attention model
13. Word-character graph convolution network for Chinese named entity recognition10.1109/TASLP.2020.2994436 ↗
14. A dictionary-guided attention network for biomedical named entity recognition in Chinese electronic medical records10.1016/j.eswa.2023.120709 ↗
15. Awad · Hidden Markov Model, in Efficient Learning Machines · 2015 · 81
16. Conditional random fields: Probabilistic models for segmenting and labeling sequence data
17. A hybrid model based on deep convolutional network for medical named entity recognition
18. Chinese NER using lattice LSTM
19. Neural Chinese named entity recognition via CNN-LSTM-CRF and joint training with word segmentation
20. Fine-tuning BERT for joint entity and relation extraction in Chinese medical text
21. Adversarial training based lattice LSTM for Chinese clinical named entity recognition10.1016/j.jbi.2019.103290 ↗
22. Chinese clinical named entity recognition with ALBERT and MHA mechanism
23. Incorporating multi-level CNN and attention mechanism for Chinese clinical named entity recognition10.1016/j.jbi.2021.103737 ↗
24. Chinese clinical named entity recognition via multi-head self-attention based BiLSTM-CRF10.1016/j.artmed.2022.102282 ↗
25. A multi-layer soft lattice based model for Chinese clinical named entity recognition10.1186/s12911-022-01924-4 ↗
26. BERT: Pre-training of deep bidirectional transformers for language understanding
27. Attention is all you need
28. Chinese clinical named entity recognition in electronic medical records: Development of a Lattice long short-term memory model with contextualized character representations10.2196/19848 ↗
29. Leveraging multi-source knowledge for Chinese clinical named entity recognition via relational graph convolutional network10.1016/j.jbi.2022.104035 ↗
30. Chinese clinical named entity recognition with variant neural structures based on BERT methods10.1016/j.jbi.2020.103422 ↗
31. A self-attention based neural architecture for Chinese medical named entity recognition10.3934/mbe.2020197 ↗
32. An RG-FLAT-CRF model for named entity recognition of Chinese electronic clinical records10.3390/electronics11081282 ↗