Modified Anam-Net Based Lightweight Deep Learning Model for Retinal Vessel Segmentation
Source abstract
Abstract
The accurate segmentation of retinal vessels is a challenging task due to the presence of various pathologies as well as the low-contrast of thin vessels and non-uniform illumination. In recent years, encoder-decoder networks have achieved outstanding performance in retinal vessel segmentation at the cost of high computational complexity. To address the aforementioned challenges and to reduce the computational complexity, we propose a lightweight convolutional neural network (CNN)-based encoder-decoder deep learning model for accurate retinal vessels segmentation. The proposed deep learning model consists of encoder-decoder architecture along with bottleneck layers that consist of depth-wise squeezing, followed by full-convolution, and finally depth-wise stretching. The inspiration for the proposed model is taken from the recently developed Anam-Net model, which was tested on CT images for COVID-19 identification. For our lightweight model, we used a stack of two 3 × 3 convolution layers (without spatial pooling in between) instead of a single 3 × 3 convolution layer as proposed in Anam-Net to increase the receptive field and to reduce the trainable parameters. The proposed method includes fewer filters in all convolutional layers than the original Anam-Net and does not have an increasing number of filters for decreasing resolution. These modifications do not compromise on the segmentation accuracy, but they do make the architecture significantly lighter in terms of the number of trainable parameters and computation time. The proposed architecture has comparatively fewer parameters (1.01M) than Anam-Net (4.47M), U-Net (31.05M), SegNet (29.50M), and most of the other recent works. The proposed model does not require any problem-specific pre- or post-processing, nor does it rely on handcrafted features. In addition, the attribute of being efficient in terms of segmentation accuracy as well as lightweight makes the proposed method a suitable candidate to be used in the screening platforms at the point of care. We evaluated our proposed model on open-access datasets namely, DRIVE, STARE, and CHASE_DB. The experimental results show that the proposed model outperforms several state-of-the-art methods, such as U-Net and its variants, fully convolutional network (FCN), SegNet, CCNet, ResWNet, residual connection-based encoder-decoder network (RCED-Net), and scale-space approx. network (SSANet) in terms of {dice coefficient, sensitivity (SN), accuracy (ACC), and the area under the ROC curve (AUC)} with the scores of {0.8184, 0.8561, 0.9669, and 0.9868} on the DRIVE dataset, the scores of {0.8233, 0.8581, 0.9726, and 0.9901} on the STARE dataset, and the scores of {0.8138, 0.8604, 0.9752, and 0.9906} on the CHASE_DB dataset. Additionally, we perform cross-training experiments on the DRIVE and STARE datasets. The result of this experiment indicates the generalization ability and robustness of the proposed model.
Source: openalex_inverted_index · Quality: baseline
Research context
OpenAlex topics: Retinal Imaging and Analysis · Retinal and Optic Conditions · Digital Imaging for Blood Diseases
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
References (49)
Show source-provided references
1. Segmentation of retinal blood vessels using the radial projection and semi-supervised approach10.1016/j.patcog.2011.01.007 ↗
2. Automated analysis of retinal images for detection of referable diabetic retinopathy10.1001/jamaophthalmol.2013.1743 ↗
3. Ridge based vessel segmentation in color images of the retina10.1109/TMI.2004.825627 ↗
4. Role of optometry school in single day large scale school vision testing10.4103/0974-620X.149861 ↗
5. Enhancing the accuracy of glaucoma detection from OCT probability maps using convolutional neural network
6. Diagnosis of diabetic retinopathy using deep neural networks10.1109/ACCESS.2018.2888639 ↗
7. Automated diabetic retinopathy detection based on binocular Siamese-like convolutional neural network10.1109/ACCESS.2019.2903171 ↗
8. Optical coherence tomography angiography in dry age-related macular degeneration10.1016/j.survophthal.2017.06.005 ↗
9. Morphologic and functional changes in retinal vessels associated with branch retinal vein occlusion10.1016/j.ophtha.2012.06.054 ↗
10. Retinal oxygen saturation in patients with systemic hypoxemia10.1167/iovs.11-7275 ↗
11. A review of vessel extraction techniques and algorithms10.1145/1031120.1031121 ↗
12. Anam-net: Anamorphic depth embedding-based lightweight CNN for segmentation of anomalies in covid-19 chest CT images10.1109/TNNLS.2021.3054746 ↗
13. Retinal vessels segmentation techniques and algorithms: A survey10.3390/app8020155 ↗
14. Locating blood vessels in retinal images by piecewise threshold probing of a matched filter response10.1109/42.845178 ↗
15. A retinal vessel boundary tracking method based on Bayesian theory and multi-scale line detection10.1016/j.compmedimag.2014.05.010 ↗
16. Retinal blood vessel segmentation approach based on mathematical morphology10.1016/j.procs.2015.09.005 ↗
17. Unsupervised method for retinal vessel segmentation based on Gabor wavelet and multiscale line detector10.1109/ACCESS.2019.2954314 ↗
18. Adaptive local thresholding by verification based multi-threshold probing with application to vessel detection in retinal images10.1109/TPAMI.2003.1159954 ↗
19. General retinal vessel segmentation using regularization-based multiconcavity modeling10.1109/TMI.2010.2043259 ↗
20. A review of retinal blood vessels extraction techniques: challenges, taxonomy, and future trends10.1007/s10044-018-0754-8 ↗
21. Retinal vessel extraction using Lattice Neural Networks with dendritic processing10.1016/j.compbiomed.2014.12.016 ↗
22. A discriminatively trained fully connected conditional random field model for blood vessel segmentation in fundus images10.1109/TBME.2016.2535311 ↗
23. Multi-level deep supervised networks for retinal vessel segmentation10.1007/s11548-017-1619-0 ↗
24. Retinal vessel segmentation based on Fully Convolutional Neural Networks10.1016/j.eswa.2018.06.034 ↗
25. Improving dense conditional random field for retinal vessel segmentation by discriminative feature learning and thin-vessel enhancement10.1016/j.cmpb.2017.06.016 ↗
26. Retinal vessel segmentation of color fundus images using multiscale convolutional neural network with an improved cross-entropy loss function10.1016/j.neucom.2018.05.011 ↗
27. Ccnet: A cross-connected convolutional network for segmenting retinal vessels using multi-scale features10.1016/j.neucom.2018.10.098 ↗
28. Abbas · Proc. of the Neural Information Processing · 2019
29. Recurrent residual U-Net for medical image segmentation10.1117/1.JMI.6.1.014006 ↗
30. Joint segment-level and pixel-wise losses for deep learning based retinal vessel segmentation10.1109/TBME.2018.2828137 ↗
31. DUNet: A deformable network for retinal vessel segmentation10.1016/j.knosys.2019.04.025 ↗
32. Dense U-net based on patch-based learning for retinal vessel segmentation
33. Fine retinal vessel segmentation by combining Nest U-net and patch-learning10.1007/s00500-020-05552-w ↗
34. Pyramid U-Net for retinal vessel segmentation
35. ResWnet for retinal small vessel segmentation10.1109/ACCESS.2020.3032453 ↗
36. Multichannel retinal blood vessel segmentation based on the combination of matched filter and u-net network
37. A new deep learning method for blood vessel segmentation in retinal images based on convolutional kernels and modified U-net model10.1016/j.cmpb.2021.106081 ↗
38. Attention guided U-Net with atrous convolution for accurate retinal vessels segmentation10.1109/ACCESS.2020.2974027 ↗
39. J. Zhuang, “LadderNet: Multi-path networks based on U-net for medical image segmentation,” 2018. [Online]. Available: https://arxiv.org/abs/1810.07810.
40. Residual connection-based encoder decoder network (RCED-Net) for retinal vessel segmentation10.1109/ACCESS.2020.3008899 ↗
41. Optic disc and cup segmentation methods for glaucoma detection with modification of U-Net convolutional neural network10.1134/S1054661817030269 ↗
42. Robust retinal vessel segmentation via locally adaptive derivative frames in orientation scores10.1109/TMI.2016.2587062 ↗
43. Wu · Medical Image Computing and Computer Assisted Intervention–MICCAI 2019. MICCAI 2019 · 2019 · 26410.1007/978-3-030-32239-7_30 ↗
44. Scale-space approximated convolutional neural networks for retinal vessel segmentation10.1016/j.cmpb.2019.06.030 ↗
45. Retinal vessel segmentation based on an improved deep forest10.1002/ima.22610 ↗
46. Computer-aided retinal vessel segmentation in retinal images: convolutional neural networks10.1007/s11042-020-09372-w ↗
47. Hard attention net for automatic retinal vessel segmentation10.1109/JBHI.2020.3002985 ↗
48. A cross-modality learning approach for vessel segmentation in retinal images10.1109/TMI.2015.2457891 ↗
49. T. B. Sekou, M. Hidane, J. Olivier and H. Cardot, “From patch to image segmentation using fully convolutional networks-application to retinal images,” 2019. http://arxiv.org/abs/1904.03892.