journal article·2017-10-19Open access

Excited-State Dynamics of Isocytosine: A Hybrid Case of Canonical Nucleobase Photodynamics

Jacob A. Berenbeim, Samuel Boldissar, Faady M. Siouri, Gregory Gate, Michael R. Haggmark, Briana Aboulache, Trevor Cohen, Mattanjah S. de Vries

Abstract

We present resonant two-photon ionization (R2PI) spectra of isocytosine (isoC) and pump–probe results on two of its tautomers. IsoC is one of a handful of alternative bases that have been proposed in scenarios of prebiotic chemistry. It is structurally similar to both cytosine (C) and guanine (G). We compare the excited-state dynamics with the Watson–Crick (WC) C and G tautomeric forms. These results suggest that the excited-state dynamics of WC form of G may primarily depend on the heterocyclic substructure of the pyrimidine moiety, which is chemically identical to isoC. For WC isoC we find a single excited-state decay with a rate of ∼10 10 s –1, while the enol form has multiple decay rates, the fastest of which is 7 times slower than for WC isoC. The excited-state dynamics of isoC exhibits striking similarities with that of G, more so than with the photodynamics of C.
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Research context

OpenAlex topics: DNA and Nucleic Acid Chemistry · Spectroscopy and Quantum Chemical Studies · Photoreceptor and optogenetics research

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106-9510, United States

Funding

Division of Chemistry · National Aeronautics and Space Administration

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